General information for g430.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as NAD(P) transhydrogenase, mitochondrial.
Parent gene
- The parent gene g430 is located on chr_3: 3326821..3327498 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g430 | g430.t2 | TSS | g430.t2 | 3326090 | 3326090 |
| chr_3 | g430 | g430.t2 | isoform | g430.t2 | 3326091 | 3327498 |
| chr_3 | g430 | g430.t2 | exon | g430.t2.exon1 | 3326091 | 3326259 |
| chr_3 | g430 | g430.t2 | exon | g430.t2.exon2 | 3326770 | 3327498 |
| chr_3 | g430 | g430.t2 | cds | g430.t2.CDS1 | 3326821 | 3327498 |
| chr_3 | g430 | g430.t2 | TTS | g430.t2 | NA | NA |
Sequences
>g430.t2 Gene=g430 Length=898
AGTTTCATTTCGACAGCGGTTCAGTGAAGAACATTTCTAAACCGAATCCGCTCCTCGATA
TTTTCTTTTTATTATTTTTTCTCTGTGGCATTTATAATTGAAATCATCTCAAGTGTGAGT
TCCTATTCATCGATAAGAGGAATATCACTACTATAGATCAAAAATTCCGTTAATTCTGTT
CAAAGTGTAAAAAAAAAATAACAAAATAAAACCTCGGAATATGTCACAAGGTGTTCTTAG
ATTGTGTACATTAGGCGGGGAGCATTTGCTTAGAATTCCTAAACCGCTTCATCCATCACG
TTTATTTACTGGAACTGTTAAACTTTTAAGCAAAGATGGAAAACCAGTTGAAGCAGTTAA
AGGTATACCTTACAAAAATTTGACAATTGGTGTGCCAAAAGAAAAATGGGCCAATGAAAA
AAGAGTTGCTATGTCACCTGCAGTTACAGCAGCTTTAATCAAAAAAGGATTTACTGTTCA
AATTGAAAAGGGAGCAGGTGAAGAGGCAAAATTTAGAGATCAAGATTATATCGATGCTGG
AGCGAAAATTGTTGATGGAAATAAAGCTTATGATTCAGATATTTTGCTAAAAGTTCGTCA
ACCAACGGCAGCTGAAATTCCATTATTGAGAGAAAACTCGACACTCATTTCATTCCTTTA
TCCAGGACAAAACAAAGATTTATTAAATGAACTTGCTAAGAAGAAAATTAATGCATTTGC
AATGGATTGTGTTCCTCGCATTTCTCGTGCTCAAGTATTTGATGCACTTAGTTCAATGGC
CAATATTGCTGGTTATCGTGCTGTTATTGAAGCTGCCAATCATTTTCCACGTTTCTTCAC
TGGACAAATTACTGCTGCTGGTAAAGTTCCACCAGCTAAGATTCTCGTTATTGGGTAA
>g430.t2 Gene=g430 Length=225
MSQGVLRLCTLGGEHLLRIPKPLHPSRLFTGTVKLLSKDGKPVEAVKGIPYKNLTIGVPK
EKWANEKRVAMSPAVTAALIKKGFTVQIEKGAGEEAKFRDQDYIDAGAKIVDGNKAYDSD
ILLKVRQPTAAEIPLLRENSTLISFLYPGQNKDLLNELAKKKINAFAMDCVPRISRAQVF
DALSSMANIAGYRAVIEAANHFPRFFTGQITAAGKVPPAKILVIG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g430.t2 | Gene3D | G3DSA:3.40.50.720 | - | 55 | 224 | 0e+00 |
| 3 | g430.t2 | PANTHER | PTHR10160 | NAD(P) TRANSHYDROGENASE | 49 | 225 | 0e+00 |
| 2 | g430.t2 | Pfam | PF05222 | Alanine dehydrogenase/PNT, N-terminal domain | 57 | 190 | 0e+00 |
| 1 | g430.t2 | Pfam | PF01262 | Alanine dehydrogenase/PNT, C-terminal domain | 194 | 225 | 8e-07 |
| 5 | g430.t2 | SMART | SM01003 | AlaDh_PNT_N_2 | 57 | 190 | 0e+00 |
| 4 | g430.t2 | SUPERFAMILY | SSF52283 | Formate/glycerate dehydrogenase catalytic domain-like | 55 | 221 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K00324 (H+-translocating NAD(P) transhydrogenase subunit alpha)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
