Gene loci information

Transcript annotation

  • This transcript has been annotated as Beta-ureidopropionase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4301 g4301.t10 TSS g4301.t10 1091561 1091561
chr_2 g4301 g4301.t10 isoform g4301.t10 1091608 1092949
chr_2 g4301 g4301.t10 exon g4301.t10.exon1 1091608 1091714
chr_2 g4301 g4301.t10 cds g4301.t10.CDS1 1091711 1091714
chr_2 g4301 g4301.t10 exon g4301.t10.exon2 1091804 1092034
chr_2 g4301 g4301.t10 cds g4301.t10.CDS2 1091804 1092034
chr_2 g4301 g4301.t10 exon g4301.t10.exon3 1092106 1092521
chr_2 g4301 g4301.t10 cds g4301.t10.CDS3 1092106 1092521
chr_2 g4301 g4301.t10 exon g4301.t10.exon4 1092572 1092949
chr_2 g4301 g4301.t10 cds g4301.t10.CDS4 1092572 1092949
chr_2 g4301 g4301.t10 TTS g4301.t10 1093079 1093079

Sequences

>g4301.t10 Gene=g4301 Length=1132
ATGGCTGAAAAAATTGAATTTAAAAATCTGGAAGAATCGTTCAAAAAGCATTTGCCAGAA
AATGAACTAAAGGAAGTCAAGAGAATTTTATATGGACGAGCAGATGACAATTGCAGCTGC
AAATAATTTCGAAATCAAGTCATACAACTTTTCTGCTGCCAAAGAAGACCTTCGAAAACC
GAAAATTGTAAAAATAGGAGCTGTACAAAATTCAATTGCTGCTCTTACAACCGATCCTAT
TCATATTCAACGAAATAAATTACATGAGAAAATTGGAAAAATTATTGATGCAGCGGGTGC
AGATAATGTAAATGTGCTGTGCTTACAGGAGGCTTGGACTATGCCATTTGCATTTTGTAC
ACGTGAAAAACATCCATGGTGTGAATTTGCTGAAAATGCTGAAAATGGACCAACAACAGA
ATTTCTTAAAAATTATGCTAGAAAATATAATATGGTCATTGTGTCACCAATACTTGAACG
TGATGAAGATCGCGGATCGGATATTATTTGGAATACAGCTGTTGTTATCTCAAATTCTGG
AAATGTAATGGGAAAGCATCGTAAAAATCATATTCCACGTGTTGGTGATTTCAATGAGTC
AACATATTATTTTGAGGGCAATACTGGTCATCCAGTTTTTGAGACCCAGTTTGGAAAAAT
CGCAATAAATATTTGCTATGGTCGTCATCATCCTCAAAACTGGATGATGTTTGGCTTGAA
CGGCGCGGAAATTGTCTTCAATCCATCTGCTACGATTGGAGCTTTATCGGAACCATTATG
GGGCATTGAAGCCAGAAATGCAGCAATTGCTAATTCTTATTTTTCTGTCGCAATCAACCG
TGTTGGAACTGAAACTTTCCCAAATGAGTTCACTTCAGCAGATGGAAAGCCTGCGCACAA
AGAATTTGGACCATTTTACGGCTCATCTTATGTTGCTGCACCTGATGGTTCTCGTACGCC
TAGCCTTTCACGTGACAGTGATGGACTTTTAATCGCCCAATTGGACCTTAATCTTTGTCG
ACAAATTAAAGATAAATGGGGTTTTAGAATGACACAACGATTATCATTGTATGGCGAGAA
ATTTACTGAAGCAAGCAAATTTGATTACAAACCACAAATTATAAAAGAATAA

>g4301.t10 Gene=g4301 Length=342
MTIAAANNFEIKSYNFSAAKEDLRKPKIVKIGAVQNSIAALTTDPIHIQRNKLHEKIGKI
IDAAGADNVNVLCLQEAWTMPFAFCTREKHPWCEFAENAENGPTTEFLKNYARKYNMVIV
SPILERDEDRGSDIIWNTAVVISNSGNVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFE
TQFGKIAINICYGRHHPQNWMMFGLNGAEIVFNPSATIGALSEPLWGIEARNAAIANSYF
SVAINRVGTETFPNEFTSADGKPAHKEFGPFYGSSYVAAPDGSRTPSLSRDSDGLLIAQL
DLNLCRQIKDKWGFRMTQRLSLYGEKFTEASKFDYKPQIIKE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g4301.t10 Gene3D G3DSA:3.60.110.10 - 1 342 0.000
2 g4301.t10 PANTHER PTHR43674 NITRILASE C965.09-RELATED 3 341 0.000
3 g4301.t10 PANTHER PTHR43674:SF2 BETA-UREIDOPROPIONASE 3 341 0.000
1 g4301.t10 Pfam PF00795 Carbon-nitrogen hydrolase 38 309 0.000
6 g4301.t10 ProSiteProfiles PS50263 Carbon-nitrogen hydrolase domain profile. 29 302 48.434
4 g4301.t10 SUPERFAMILY SSF56317 Carbon-nitrogen hydrolase 28 325 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006807 nitrogen compound metabolic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values