Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Beta-ureidopropionase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4301 g4301.t11 TSS g4301.t11 1091561 1091561
chr_2 g4301 g4301.t11 isoform g4301.t11 1091608 1092949
chr_2 g4301 g4301.t11 exon g4301.t11.exon1 1091608 1092167
chr_2 g4301 g4301.t11 cds g4301.t11.CDS1 1092108 1092167
chr_2 g4301 g4301.t11 exon g4301.t11.exon2 1092237 1092949
chr_2 g4301 g4301.t11 cds g4301.t11.CDS2 1092237 1092530
chr_2 g4301 g4301.t11 TTS g4301.t11 1093079 1093079

Sequences

>g4301.t11 Gene=g4301 Length=1273
ATGGCTGAAAAAATTGAATTTAAAAATCTGGAAGAATCGTTCAAAAAGCATTTGCCAGAA
AATGAACTAAAGGAAGTCAAGAGAATTTTATATGGACGAGCAGATGAGTAAGTTTTCTGA
ATAAATTTTTGTAAAAATCTTATGTCTCTATATTTTTTTTCAAGTCATGAACTTTCAATT
AATGATGCTGCACTAGCAATTGCAGCTGCAAATAATTTCGAAATCAAGTCATACAACTTT
TCTGCTGCCAAAGAAGACCTTCGAAAACCGAAAATTGTAAAAATAGGAGCTGTACAAAAT
TCAATTGCTGCTCTTACAACCGATCCTATTCATATTCAACGAAATAAATTACATGAGAAA
ATTGGAAAAATTATTGATGCAGCGGGTGCAGATAATGTAAATGTGCTGTGCTTACAGGAG
GCTTGGAGTAATTTATTTTTATGATTAATTTTAATGCAAATTGAAATTTATATATGATTT
ATTCATTTTTTTAAAAAGCTATGCCATTTGCATTTTGTACACGTGAAAAACATCCATGGT
GTGAATTTGCTGAAAATGCTATACTTGAACGTGATGAAGATCGCGGATCGGATATTATTT
GGAATACAGCTGTTGTTATCTCAAATTCTGGAAATGTAATGGGAAAGCATCGTAAAAATC
ATATTCCACGTGTTGGTGATTTCAATGAGTCAACATATTATTTTGAGGGCAATACTGGTC
ATCCAGTTTTTGAGACCCAGTTTGGAAAAATCGCAATAAATATTTGCTATGGTCGTCATC
ATCCTCAAAACTGGATGATGTTTGGCTTGAACGGCGCGGAAATTGTCTTCAATCCATCTG
CTACGGTAAAATGATTTAAATCTTCTAAATAATTTTATTAGTTACAAATTTATAGATTGG
AGCTTTATCGGAACCATTATGGGGCATTGAAGCCAGAAATGCAGCAATTGCTAATTCTTA
TTTTTCTGTCGCAATCAACCGTGTTGGAACTGAAACTTTCCCAAATGAGTTCACTTCAGC
AGATGGAAAGCCTGCGCACAAAGAATTTGGACCATTTTACGGCTCATCTTATGTTGCTGC
ACCTGATGGTTCTCGTACGCCTAGCCTTTCACGTGACAGTGATGGACTTTTAATCGCCCA
ATTGGACCTTAATCTTTGTCGACAAATTAAAGATAAATGGGGTTTTAGAATGACACAACG
ATTATCATTGTATGGCGAGAAATTTACTGAAGCAAGCAAATTTGATTACAAACCACAAAT
TATAAAAGAATAA

>g4301.t11 Gene=g4301 Length=117
MPFAFCTREKHPWCEFAENAILERDEDRGSDIIWNTAVVISNSGNVMGKHRKNHIPRVGD
FNESTYYFEGNTGHPVFETQFGKIAINICYGRHHPQNWMMFGLNGAEIVFNPSATVK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g4301.t11 Gene3D G3DSA:3.60.110.10 - 1 117 0.000
2 g4301.t11 PANTHER PTHR43674 NITRILASE C965.09-RELATED 1 20 0.000
4 g4301.t11 PANTHER PTHR43674:SF2 BETA-UREIDOPROPIONASE 1 20 0.000
3 g4301.t11 PANTHER PTHR43674 NITRILASE C965.09-RELATED 20 116 0.000
5 g4301.t11 PANTHER PTHR43674:SF2 BETA-UREIDOPROPIONASE 20 116 0.000
1 g4301.t11 Pfam PF00795 Carbon-nitrogen hydrolase 23 112 0.000
8 g4301.t11 ProSiteProfiles PS50263 Carbon-nitrogen hydrolase domain profile. 1 117 25.294
6 g4301.t11 SUPERFAMILY SSF56317 Carbon-nitrogen hydrolase 22 115 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006807 nitrogen compound metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed