Gene loci information

Transcript annotation

  • This transcript has been annotated as Beta-ureidopropionase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4301 g4301.t7 TSS g4301.t7 1091561 1091561
chr_2 g4301 g4301.t7 isoform g4301.t7 1091608 1092949
chr_2 g4301 g4301.t7 exon g4301.t7.exon1 1091608 1091714
chr_2 g4301 g4301.t7 cds g4301.t7.CDS1 1091608 1091714
chr_2 g4301 g4301.t7 exon g4301.t7.exon2 1091772 1092034
chr_2 g4301 g4301.t7 cds g4301.t7.CDS2 1091772 1092034
chr_2 g4301 g4301.t7 exon g4301.t7.exon3 1092106 1092521
chr_2 g4301 g4301.t7 cds g4301.t7.CDS3 1092106 1092521
chr_2 g4301 g4301.t7 exon g4301.t7.exon4 1092572 1092770
chr_2 g4301 g4301.t7 cds g4301.t7.CDS4 1092572 1092770
chr_2 g4301 g4301.t7 exon g4301.t7.exon5 1092865 1092949
chr_2 g4301 g4301.t7 cds g4301.t7.CDS5 1092865 1092869
chr_2 g4301 g4301.t7 TTS g4301.t7 1093079 1093079

Sequences

>g4301.t7 Gene=g4301 Length=1070
ATGGCTGAAAAAATTGAATTTAAAAATCTGGAAGAATCGTTCAAAAAGCATTTGCCAGAA
AATGAACTAAAGGAAGTCAAGAGAATTTTATATGGACGAGCAGATGATCATGAACTTTCA
ATTAATGATGCTGCACTAGCAATTGCAGCTGCAAATAATTTCGAAATCAAGTCATACAAC
TTTTCTGCTGCCAAAGAAGACCTTCGAAAACCGAAAATTGTAAAAATAGGAGCTGTACAA
AATTCAATTGCTGCTCTTACAACCGATCCTATTCATATTCAACGAAATAAATTACATGAG
AAAATTGGAAAAATTATTGATGCAGCGGGTGCAGATAATGTAAATGTGCTGTGCTTACAG
GAGGCTTGGACTATGCCATTTGCATTTTGTACACGTGAAAAACATCCATGGTGTGAATTT
GCTGAAAATGCTGAAAATGGACCAACAACAGAATTTCTTAAAAATTATGCTAGAAAATAT
AATATGGTCATTGTGTCACCAATACTTGAACGTGATGAAGATCGCGGATCGGATATTATT
TGGAATACAGCTGTTGTTATCTCAAATTCTGGAAATGTAATGGGAAAGCATCGTAAAAAT
CATATTCCACGTGTTGGTGATTTCAATGAGTCAACATATTATTTTGAGGGCAATACTGGT
CATCCAGTTTTTGAGACCCAGTTTGGAAAAATCGCAATAAATATTTGCTATGGTCGTCAT
CATCCTCAAAACTGGATGATGTTTGGCTTGAACGGCGCGGAAATTGTCTTCAATCCATCT
GCTACGATTGGAGCTTTATCGGAACCATTATGGGGCATTGAAGCCAGAAATGCAGCAATT
GCTAATTCTTATTTTTCTGTCGCAATCAACCGTGTTGGAACTGAAACTTTCCCAAATGAG
TTCACTTCAGCAGATGGAAAGCCTGCGCACAAAGAATTTGGACCATTTTACGGCTCATCT
TATGTTGCTGCACCTGATGGTTCTCAATGACACAACGATTATCATTGTATGGCGAGAAAT
TTACTGAAGCAAGCAAATTTGATTACAAACCACAAATTATAAAAGAATAA

>g4301.t7 Gene=g4301 Length=329
MAEKIEFKNLEESFKKHLPENELKEVKRILYGRADDHELSINDAALAIAAANNFEIKSYN
FSAAKEDLRKPKIVKIGAVQNSIAALTTDPIHIQRNKLHEKIGKIIDAAGADNVNVLCLQ
EAWTMPFAFCTREKHPWCEFAENAENGPTTEFLKNYARKYNMVIVSPILERDEDRGSDII
WNTAVVISNSGNVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETQFGKIAINICYGRH
HPQNWMMFGLNGAEIVFNPSATIGALSEPLWGIEARNAAIANSYFSVAINRVGTETFPNE
FTSADGKPAHKEFGPFYGSSYVAAPDGSQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g4301.t7 Gene3D G3DSA:3.60.110.10 - 3 329 0.000
2 g4301.t7 PANTHER PTHR43674 NITRILASE C965.09-RELATED 3 328 0.000
3 g4301.t7 PANTHER PTHR43674:SF2 BETA-UREIDOPROPIONASE 3 328 0.000
1 g4301.t7 Pfam PF00795 Carbon-nitrogen hydrolase 83 328 0.000
6 g4301.t7 ProSiteProfiles PS50263 Carbon-nitrogen hydrolase domain profile. 74 329 43.556
4 g4301.t7 SUPERFAMILY SSF56317 Carbon-nitrogen hydrolase 69 328 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006807 nitrogen compound metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed