General information for g4302.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Beta-ureidopropionase.
Parent gene
- The parent gene g4302 is located on chr_2: 1093065..1094144 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4302 | g4302.t2 | isoform | g4302.t2 | 1093065 | 1094144 |
| chr_2 | g4302 | g4302.t2 | exon | g4302.t2.exon1 | 1093065 | 1093292 |
| chr_2 | g4302 | g4302.t2 | exon | g4302.t2.exon2 | 1093380 | 1093465 |
| chr_2 | g4302 | g4302.t2 | cds | g4302.t2.CDS1 | 1093382 | 1093465 |
| chr_2 | g4302 | g4302.t2 | exon | g4302.t2.exon3 | 1093521 | 1094144 |
| chr_2 | g4302 | g4302.t2 | cds | g4302.t2.CDS2 | 1093521 | 1094144 |
| chr_2 | g4302 | g4302.t2 | TTS | g4302.t2 | 1094246 | 1094246 |
| chr_2 | g4302 | g4302.t2 | TSS | g4302.t2 | NA | NA |
Sequences
>g4302.t2 Gene=g4302 Length=938
ATGAGTGAAACAAGTGAAGTTAAAATTTCTTTAAATGCACAGAAAATAGCAAATGAAAAT
GATTTTACTATAAAATCATGCAAATTTGACACAAGTACCAACCCTAGAAATGTGAAAATT
GCAATTTTTCAAACTAAATTTCCTCAAACACAAAAAAAATTTCGAGATAATCAAAATGAG
TTATTTGAAAATGTCGAGAAAATGTGTGTTGCAGCATCTAAAGAGAATCTATGCCATATC
CCTTCTATTCATTGAATACAAATAATTGGAATGAAATTGTTGAAAATGATCATACATTTG
AATTTTTATTAAAAATAGCATTAAACTATAAATTTCTCATTATCGGATCGATTTTAGAGA
TATCAGATGAAAAGTTTTACAACACATGTCTATTGATATCGAGTAATGGCAAAATTATTG
GGAAATATAGAAAGCATCATATGCCACCAATTGAAAAATCTCATTTATCATCTGGTTCTT
ATGAAAGTTCTGTTTTTGATACAGAATATGGAAAAATTGGAATTTTAATTTGCTATGAAA
GACATTACCCATTTAAATCGAAAATTTTAGGTCTAAAAGGAGCCGAAATAATTTTTAATC
CATCTTCAGAAGATGTAAACAGTTTATCAGAAAGATTGTGGTTTGTGGAAAATCTGAATA
CTGCTGTGGCAAATGGAATTTTTTGTGTCTCAATTAATCGTTGTGGCGAAGAAAATTTTG
GAAAGCATTCACTCAAATATTTTGGTTCATCTTATGTTGCTTCACCATTTGGCATCATCT
CATCACATCTGTCTCAACAACAAGGAATTTTAATCACAGAAATTGATTTAAATTTGATAG
AGAAAGCAAGAAAAGAAATTTCTTTTCATAATAATCAAAAATTAAGTGATTTTGTGAAAG
ATTTGAATGAACTTGAAAAGTCAAATAATAATAAATAA
>g4302.t2 Gene=g4302 Length=235
MPYPFYSLNTNNWNEIVENDHTFEFLLKIALNYKFLIIGSILEISDEKFYNTCLLISSNG
KIIGKYRKHHMPPIEKSHLSSGSYESSVFDTEYGKIGILICYERHYPFKSKILGLKGAEI
IFNPSSEDVNSLSERLWFVENLNTAVANGIFCVSINRCGEENFGKHSLKYFGSSYVASPF
GIISSHLSQQQGILITEIDLNLIEKARKEISFHNNQKLSDFVKDLNELEKSNNNK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g4302.t2 | Gene3D | G3DSA:3.60.110.10 | - | 1 | 234 | 0.00 |
| 2 | g4302.t2 | PANTHER | PTHR43674 | NITRILASE C965.09-RELATED | 5 | 218 | 0.00 |
| 1 | g4302.t2 | Pfam | PF00795 | Carbon-nitrogen hydrolase | 11 | 208 | 0.00 |
| 5 | g4302.t2 | ProSiteProfiles | PS50263 | Carbon-nitrogen hydrolase domain profile. | 1 | 200 | 35.45 |
| 3 | g4302.t2 | SUPERFAMILY | SSF56317 | Carbon-nitrogen hydrolase | 4 | 217 | 0.00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006807 | nitrogen compound metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
