General information for g4303.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Beta-ureidopropionase.
Parent gene
- The parent gene g4303 is located on chr_2: 1094999..1095781 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4303 | g4303.t8 | TSS | g4303.t8 | 1094367 | 1094367 |
| chr_2 | g4303 | g4303.t8 | isoform | g4303.t8 | 1094401 | 1095700 |
| chr_2 | g4303 | g4303.t8 | exon | g4303.t8.exon1 | 1094401 | 1094767 |
| chr_2 | g4303 | g4303.t8 | cds | g4303.t8.CDS1 | 1094401 | 1094767 |
| chr_2 | g4303 | g4303.t8 | exon | g4303.t8.exon2 | 1094847 | 1094941 |
| chr_2 | g4303 | g4303.t8 | cds | g4303.t8.CDS2 | 1094847 | 1094941 |
| chr_2 | g4303 | g4303.t8 | exon | g4303.t8.exon3 | 1095655 | 1095700 |
| chr_2 | g4303 | g4303.t8 | cds | g4303.t8.CDS3 | 1095655 | 1095675 |
| chr_2 | g4303 | g4303.t8 | TTS | g4303.t8 | 1095691 | 1095691 |
Sequences
>g4303.t8 Gene=g4303 Length=508
ATGTCTGCACCATTTAGTCTCAAAACATTGGAAGATTGCCTTAAGAATGTTCCAGCTGAT
GACTTAAAAGATTTAAAGACTCATATTTATGGTCGATCAAATGATAATGAGTTGCCAGTC
TCAACAAAGGCACAAAAAATTGCAAAAGACAACACTTTTGTAATTAAAAGTTATAAATTT
GAAGCTATTAAAGAAGATCTTCGTAAGCCAAGAGTTGTCAGAATTGGAGCTATCCAAACA
TCTCTTGCAGCCCCTACAACTGAACCGATCGGTGTACAACGTCAAAAGATTTTTGATAAA
GTTGCGAAAATCATCGAAGCTGCAGCACTTGAAAATGTGAATATATTGTGCCTCCAAGAG
CTATGGTATCTTCCTTATGTTTTCTGTACACGTGAAAAGTATCCATGGTGTGAATTTGCT
GAAAATCCAGAGTCTGGAGCTGCTGTAACTTTCTTATCAACTAGCTACAAAATTGGACTT
TAAGCCACAAATTATTCGAGAAATTTAA
>g4303.t8 Gene=g4303 Length=160
MSAPFSLKTLEDCLKNVPADDLKDLKTHIYGRSNDNELPVSTKAQKIAKDNTFVIKSYKF
EAIKEDLRKPRVVRIGAIQTSLAAPTTEPIGVQRQKIFDKVAKIIEAAALENVNILCLQE
LWYLPYVFCTREKYPWCEFAENPESGAAVTFLSTSYKIGL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g4303.t8 | Gene3D | G3DSA:3.60.110.10 | - | 3 | 157 | 0e+00 |
| 1 | g4303.t8 | PANTHER | PTHR43674 | NITRILASE C965.09-RELATED | 7 | 154 | 0e+00 |
| 2 | g4303.t8 | PANTHER | PTHR43674:SF2 | BETA-UREIDOPROPIONASE | 7 | 154 | 0e+00 |
| 3 | g4303.t8 | SUPERFAMILY | SSF56317 | Carbon-nitrogen hydrolase | 67 | 152 | 9e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed