General information for g4306.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Etoposide-induced protein 2.4-like protein.
Parent gene
- The parent gene g4306 is located on chr_2: 1111345..1111796 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4306 | g4306.t1 | TSS | g4306.t1 | 1110391 | 1110391 |
| chr_2 | g4306 | g4306.t1 | isoform | g4306.t1 | 1110531 | 1111796 |
| chr_2 | g4306 | g4306.t1 | exon | g4306.t1.exon1 | 1110531 | 1110545 |
| chr_2 | g4306 | g4306.t1 | cds | g4306.t1.CDS1 | 1110531 | 1110545 |
| chr_2 | g4306 | g4306.t1 | exon | g4306.t1.exon2 | 1110621 | 1110775 |
| chr_2 | g4306 | g4306.t1 | cds | g4306.t1.CDS2 | 1110621 | 1110775 |
| chr_2 | g4306 | g4306.t1 | exon | g4306.t1.exon3 | 1110836 | 1111196 |
| chr_2 | g4306 | g4306.t1 | cds | g4306.t1.CDS3 | 1110836 | 1111196 |
| chr_2 | g4306 | g4306.t1 | exon | g4306.t1.exon4 | 1111258 | 1111363 |
| chr_2 | g4306 | g4306.t1 | cds | g4306.t1.CDS4 | 1111258 | 1111363 |
| chr_2 | g4306 | g4306.t1 | exon | g4306.t1.exon5 | 1111420 | 1111603 |
| chr_2 | g4306 | g4306.t1 | cds | g4306.t1.CDS5 | 1111420 | 1111603 |
| chr_2 | g4306 | g4306.t1 | exon | g4306.t1.exon6 | 1111667 | 1111796 |
| chr_2 | g4306 | g4306.t1 | cds | g4306.t1.CDS6 | 1111667 | 1111796 |
| chr_2 | g4306 | g4306.t1 | TTS | g4306.t1 | 1111945 | 1111945 |
Sequences
>g4306.t1 Gene=g4306 Length=951
ATGGAGAGTTTAAAGATTATCAGTTTATCCTTCTTTGATGGTTTTATTGATTCACTTAAA
AACGTATGGGTTATATTTTATATTGACAAGACGATTAATAAGAAATTAGAAGCTAATGAT
CAGCAGCAAATAAATTCATCAAAAAAATCAAACAAAGAAAAGAAGAAGGAAGAGAAGTCA
AAAGTCGCGCTCCGGGTTTTTCAATGTTGTGCATTAAATGGTGGATTGTTTCTACTTAGT
CTGTTATTTTTTTATCATTTACTTCTGCCCTTCTTGGAAGCTATCATAACACATTTTACT
GACCCTAGCATTTGGAGTTATATAAATATCACATTATCTTGGATTTTTTCATGCATATGG
GTTGTACCTCTCTTTCTATTATCAAAGGTATTCAATTTTTTCTGGTTTCAAGATATCGCA
GATGCAACATATGAATTCCGCAGAGGAAAGAGAACTCTTTTACCATCAATATCTTTATTG
TTAGCTGATGTAATTTTCTCTCTTATTGTCCAAACATTATTTATACTTCAGGGAACAACT
TTAAGTTATATACCAATTGTAGGACGTTTTCTCTGTTTTATACATATCTGTCTACTTTAT
AGTCTTTATTCATTTGAATATAAATGGTTTAATCAAGGATATGAACTATATAAACGATTA
AAACTTGTAGAATTTAATTGGCCATATTACATAGGTTTTGGCTTTTATCTTGGTATATTA
ACAGAGCTTTCAGATTCCTTTATAATGAAAGGATGCATATTTTCAATGTTTTTTCCGTTG
CTCATTATAAGTAGCATTGATAGTGTGCCTCAACAAAGAATTGACTGTCCTATTCCTTTT
TTCTCGATCGTTGTAGCTCTTCCGAACTTCTTAGTTAGTAGAAAATTGAAATCAAATCAA
GTTCAGCAATATTCTGGTAATCGTTCTTCAACGACGCCAACCAGACGATAA
>g4306.t1 Gene=g4306 Length=316
MESLKIISLSFFDGFIDSLKNVWVIFYIDKTINKKLEANDQQQINSSKKSNKEKKKEEKS
KVALRVFQCCALNGGLFLLSLLFFYHLLLPFLEAIITHFTDPSIWSYINITLSWIFSCIW
VVPLFLLSKVFNFFWFQDIADATYEFRRGKRTLLPSISLLLADVIFSLIVQTLFILQGTT
LSYIPIVGRFLCFIHICLLYSLYSFEYKWFNQGYELYKRLKLVEFNWPYYIGFGFYLGIL
TELSDSFIMKGCIFSMFFPLLIISSIDSVPQQRIDCPIPFFSIVVALPNFLVSRKLKSNQ
VQQYSGNRSSTTPTRR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g4306.t1 | PANTHER | PTHR21389 | P53 INDUCED PROTEIN | 55 | 303 | 1.9E-72 |
| 1 | g4306.t1 | Pfam | PF07264 | Etoposide-induced protein 2.4 (EI24) | 61 | 240 | 2.3E-16 |
| 8 | g4306.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 61 | - |
| 19 | g4306.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 62 | 84 | - |
| 14 | g4306.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 85 | 103 | - |
| 17 | g4306.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 104 | 127 | - |
| 10 | g4306.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 128 | 152 | - |
| 18 | g4306.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 153 | 176 | - |
| 13 | g4306.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 177 | 181 | - |
| 16 | g4306.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 182 | 203 | - |
| 11 | g4306.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 204 | 222 | - |
| 20 | g4306.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 223 | 241 | - |
| 12 | g4306.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 242 | 246 | - |
| 15 | g4306.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 247 | 266 | - |
| 9 | g4306.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 267 | 316 | - |
| 5 | g4306.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 74 | 96 | - |
| 4 | g4306.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 111 | 133 | - |
| 7 | g4306.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 153 | 175 | - |
| 6 | g4306.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 185 | 207 | - |
| 3 | g4306.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 227 | 249 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K10134 (etoposide-induced 2.4 mRNA)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
