Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Etoposide-induced protein 2.4-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4306 g4306.t5 TSS g4306.t5 1110391 1110391
chr_2 g4306 g4306.t5 isoform g4306.t5 1110531 1111796
chr_2 g4306 g4306.t5 exon g4306.t5.exon1 1110531 1110545
chr_2 g4306 g4306.t5 cds g4306.t5.CDS1 1110531 1110545
chr_2 g4306 g4306.t5 exon g4306.t5.exon2 1110621 1110775
chr_2 g4306 g4306.t5 cds g4306.t5.CDS2 1110621 1110775
chr_2 g4306 g4306.t5 exon g4306.t5.exon3 1110836 1111196
chr_2 g4306 g4306.t5 cds g4306.t5.CDS3 1110836 1111196
chr_2 g4306 g4306.t5 exon g4306.t5.exon4 1111258 1111363
chr_2 g4306 g4306.t5 cds g4306.t5.CDS4 1111258 1111363
chr_2 g4306 g4306.t5 exon g4306.t5.exon5 1111420 1111796
chr_2 g4306 g4306.t5 cds g4306.t5.CDS5 1111420 1111607
chr_2 g4306 g4306.t5 TTS g4306.t5 1111945 1111945

Sequences

>g4306.t5 Gene=g4306 Length=1014
ATGGAGAGTTTAAAGATTATCAGTTTATCCTTCTTTGATGGTTTTATTGATTCACTTAAA
AACGTATGGGTTATATTTTATATTGACAAGACGATTAATAAGAAATTAGAAGCTAATGAT
CAGCAGCAAATAAATTCATCAAAAAAATCAAACAAAGAAAAGAAGAAGGAAGAGAAGTCA
AAAGTCGCGCTCCGGGTTTTTCAATGTTGTGCATTAAATGGTGGATTGTTTCTACTTAGT
CTGTTATTTTTTTATCATTTACTTCTGCCCTTCTTGGAAGCTATCATAACACATTTTACT
GACCCTAGCATTTGGAGTTATATAAATATCACATTATCTTGGATTTTTTCATGCATATGG
GTTGTACCTCTCTTTCTATTATCAAAGGTATTCAATTTTTTCTGGTTTCAAGATATCGCA
GATGCAACATATGAATTCCGCAGAGGAAAGAGAACTCTTTTACCATCAATATCTTTATTG
TTAGCTGATGTAATTTTCTCTCTTATTGTCCAAACATTATTTATACTTCAGGGAACAACT
TTAAGTTATATACCAATTGTAGGACGTTTTCTCTGTTTTATACATATCTGTCTACTTTAT
AGTCTTTATTCATTTGAATATAAATGGTTTAATCAAGGATATGAACTATATAAACGATTA
AAACTTGTAGAATTTAATTGGCCATATTACATAGGTTTTGGCTTTTATCTTGGTATATTA
ACAGAGCTTTCAGATTCCTTTATAATGAAAGGATGCATATTTTCAATGTTTTTTCCGTTG
CTCATTATAAGTAGCATTGATAGTGTGCCTCAACAAAGAATGTAAGCTGACTTGAAAGAT
CAATATGATGACAGTTTATTCTTATATTAATCTTCTTTTTCTAGTGACTGTCCTATTCCT
TTTTTCTCGATCGTTGTAGCTCTTCCGAACTTCTTAGTTAGTAGAAAATTGAAATCAAAT
CAAGTTCAGCAATATTCTGGTAATCGTTCTTCAACGACGCCAACCAGACGATAA

>g4306.t5 Gene=g4306 Length=274
MESLKIISLSFFDGFIDSLKNVWVIFYIDKTINKKLEANDQQQINSSKKSNKEKKKEEKS
KVALRVFQCCALNGGLFLLSLLFFYHLLLPFLEAIITHFTDPSIWSYINITLSWIFSCIW
VVPLFLLSKVFNFFWFQDIADATYEFRRGKRTLLPSISLLLADVIFSLIVQTLFILQGTT
LSYIPIVGRFLCFIHICLLYSLYSFEYKWFNQGYELYKRLKLVEFNWPYYIGFGFYLGIL
TELSDSFIMKGCIFSMFFPLLIISSIDSVPQQRM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g4306.t5 PANTHER PTHR21389 P53 INDUCED PROTEIN 54 273 1.8E-67
1 g4306.t5 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 61 240 1.8E-16
9 g4306.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 61 -
20 g4306.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 62 84 -
15 g4306.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 85 103 -
18 g4306.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 104 127 -
10 g4306.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 128 152 -
19 g4306.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 153 176 -
14 g4306.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 177 181 -
17 g4306.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 182 203 -
11 g4306.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 204 222 -
21 g4306.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 223 241 -
13 g4306.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 242 246 -
16 g4306.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 247 266 -
12 g4306.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 267 274 -
5 g4306.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 75 97 -
4 g4306.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 112 134 -
8 g4306.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 154 176 -
6 g4306.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 186 205 -
7 g4306.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 226 243 -
3 g4306.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 247 266 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values