Gene loci information

Transcript annotation

  • This transcript has been annotated as NAD(P) transhydrogenase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g431 g431.t2 isoform g431.t2 3330635 3331438
chr_3 g431 g431.t2 exon g431.t2.exon1 3330635 3331438
chr_3 g431 g431.t2 cds g431.t2.CDS1 3330811 3331437
chr_3 g431 g431.t2 TTS g431.t2 3332403 3332403
chr_3 g431 g431.t2 TSS g431.t2 NA NA

Sequences

>g431.t2 Gene=g431 Length=804
GGTAGCGTTGTAGTTGACTTGGCAGCCGAAGCGGGTGGTAATATTGAAACAATTGAGCCT
GGAAAAATTGTCACAAAGCACGGGTTGTTCATATTGGTCTTACTGATCTTCCATCACGTT
TACCAACACAAGCATCAACACTTTATGCCAATAATATCTCAAAACTTCTTCTTTCAATGG
GCGAGAAAAATCATTTTGATATTAATTTGAAAGATGATGTAGTTCGTGGAAGTATTGTTG
CACATAATGGTGAAGTAACTTGGCCACCACCCGAAATTGCAGTTTCAGCTCAACCACAGC
CGAGTGCAAAGAAGGAAGGTCAAGCAGTTGTCAAATCCGCACCAGCAAATCCATTTAAAG
ACACAATGACAAGTGTATTAACATATACAACTGGACTTGGCACATTAATCACACTCGGTG
CTGTCTCGCCTAATCCTGCATTTACAACTATGATGTCAACATTTGCATTATCAGGCATTG
TCGGTTATCATACAGTTTGGGGAGTTATTCCGGCTTTGCATTCACCACTTATGTCATGCA
CAAACGCTATCTCAGGAATTACAGCAGTTGGTGGTTTACTCTTGATGGGCGGTGGATATT
TCCCAACAAATTCAATTGAATTTTTATCAGCAGGTGCTGCTTTAATTTCATTTGTAAACA
TTTTCGGTGGATTCTTAGTCACACAAAGAATGTTAGACATGTTCAAACGTCCAACTGATC
CACCAGAATATAATTATTTGTATGGAATTCCTGCTGCTGCATTTTTGGGGGAATACGGTC
TCGCTGCAATGAATGGACTCTCTG

>g431.t2 Gene=g431 Length=209
MGEKNHFDINLKDDVVRGSIVAHNGEVTWPPPEIAVSAQPQPSAKKEGQAVVKSAPANPF
KDTMTSVLTYTTGLGTLITLGAVSPNPAFTTMMSTFALSGIVGYHTVWGVIPALHSPLMS
CTNAISGITAVGGLLLMGGGYFPTNSIEFLSAGAALISFVNIFGGFLVTQRMLDMFKRPT
DPPEYNYLYGIPAAAFLGEYGLAAMNGLS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g431.t2 Gene3D G3DSA:3.40.50.720 - 1 38 2.4E-7
2 g431.t2 PANTHER PTHR10160 NAD(P) TRANSHYDROGENASE 1 185 2.6E-74
1 g431.t2 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 93 178 5.1E-30
10 g431.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 62 -
15 g431.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 63 83 -
11 g431.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 84 88 -
13 g431.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 89 111 -
9 g431.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 112 122 -
14 g431.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 123 143 -
12 g431.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 144 148 -
16 g431.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 149 168 -
8 g431.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 169 209 -
5 g431.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 67 84 -
4 g431.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 89 111 -
3 g431.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 123 142 -
6 g431.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 146 168 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values