Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4310 g4310.t4 isoform g4310.t4 1121427 1123997
chr_2 g4310 g4310.t4 exon g4310.t4.exon1 1121427 1123134
chr_2 g4310 g4310.t4 cds g4310.t4.CDS1 1123022 1123111
chr_2 g4310 g4310.t4 exon g4310.t4.exon2 1123327 1123419
chr_2 g4310 g4310.t4 exon g4310.t4.exon3 1123477 1123804
chr_2 g4310 g4310.t4 exon g4310.t4.exon4 1123865 1123997
chr_2 g4310 g4310.t4 TSS g4310.t4 NA NA
chr_2 g4310 g4310.t4 TTS g4310.t4 NA NA

Sequences

>g4310.t4 Gene=g4310 Length=2262
ATCAGAATTCAATGTGCTTGGTCGTATTGGTGGTGACGCAGATTTATCACCAAGAGGTAA
AAAATATAGTGAAAATCTTGCTAAACAATTAGGTGGTCCAGGAAGTAGCCCTAATGCACC
AAAGCCAAGATTAATATGGACTTCAGAGCTCCAACGTACAATTCATACTGTTCAAAATAT
TCCCGGACCACGAACAGCTCTCAAAGATCTTAATGAAATAAATGCAGGTATTTGTGAGGG
TTTGACATATGAGGAAATTCAAGAGCGTTTTCCACAAGAATTTGCATGGCGTGACGCAGA
TAAATTGAAATATCGTTATCCCCATGGCGAGAGTTATTTGGATTTATTGCAAAGAGTTGA
TGGTGTCGTTCAAGCACTTTTATTGAACACTGAAGTTTTGGTCGTATCACATCAAGCAGT
TCTTAGATGCATTTTAGCTTATTTCAAAGGAAGCAAACCAGAAGAAATTCCGTACGTCAA
TGTGCCACTTCATACGCTTTTAATCGTAAAATCACATGGCTATGATTTCAAAATTGAAAC
TGTCCCCTTAAAAGTGGAGTGCGTTGACACATATCGCATGCAGCCATCGAATTGCTCTAT
AATGCGTACTACACAAGAAGCGCTTACCACAGTACCACAACATTTCGACGCACCGCTTAT
TAATTAACATAAGGAGGACTATGAATCTTCAAGAGCGCCAGCTAAGCAAATTAAATTAAG
CAATTGAACTGCAAACTCATTACACATGATTCACTATTTTATTTTTTCGCTTCAATGCAA
ATGAGAGAAAGACTTTACAGACAGTCTAAAAAATATTGAAAAACAAAAATAACTTTCATT
ATCATTCTTCTATTATTAATCGTTCTTCTGTCTTCGTAGTTTTAATTGATTTGACAAGCA
AAAAACCTTTTTATTGTGTTTTTAAATAGTACTTTTTGTTTTTTCCTTATCATAATTCAA
AATTGCATTTTTTTGATTTTTTCTTTTCTGCCAATTTAAATAATCAATTTTTTTTTCAAA
CTACATATCGCTCTATATTGTAGCACATACTAATTTTAGTTTTTCTTTTCTTTTTTAAAA
CTGTAGTAATTTTGATTTTTTTAATAATTAAAATTTAATTTAATTTGATTGTGAGTTGAA
TTTTTAGTTATATAATCAATGTATTTCTATATTTTTTATTCATAGACATAGCGTTTATTG
ACAAGACTTTATTTCTATAGATAGACAAAGAACAAGTCAACAAAATTAATTTGAATTCAT
ATTTTAAAATAAAATTTTCTCCCAATGAGAAATGCAAGAAATTTTTACACAAAACATTTA
AGTTTAAGGAAAATTTTTACGCATGAAAAATTGGCAAATAGAATGTAATAATATTTCAAT
CAAAAATAAGTTTTAAGAAAACAACTTTAATTTGACCGAAGTCTCTTTTAGATTTTTCCT
CTAAATGACATTCAAGTTTCGATAGCACGTTTTTTTTCTTCAAGGTCATTTCTCGTCGAG
AATATCATGAGAAATGAGAGAAAGAGTGGGGAAATGAAAGAAAATTTCACTTTCTTTCTT
TTTTTATTTGCCATATGCTCTGATGCTTTTTACATCTCATATTTAAGATAGAAGACAAAA
AAATTATTTATAAATAATGAAGTGCACAACATATTTTTTGCTTAAAATTTATCACAATTT
AAGAGAGTAAAATAAAATTGATAATAAATTGGAACTTTAGATTACCTGATCCAAACACAC
AAAAATGAATTAAATAATAGAAAAAAGAGTATGATATTTAAATTATAAGTACATACATAC
ACAAGTTAAACTTCCAAAAAACGAAAAATAATTGATGTCTATGCAAAAATTCTATTTAAG
AAAATGTTACTACTCAAGTAGTTAATTGATTAAAAAGAATATTTGAATAAAAACCTTTAA
TCGAGTCAATTAACTTTTATGCACACTAATAGCTTCTTGTGATGCACAAAAAATGAGAAT
TTTTTGCGTAGGCAGCTTTTGAAATAAGTTTTTTATTTTCATTAATGAAAAGTTACGCAA
TGCAAATATGTCTACATCGATGAAAAATAAAACCATAAAATTTTAATGAATCAGGATGAT
AGAAACAGACACAAATAAACTACATAACCACTAACTGCCAATCGTTATCGTCAAAAAACA
GATTTAAAATTACACAGAGAGAAAACAAAAGAAAAAAATATTAAACACAATCACATTTCT
AAGAGACAAAAAAACTTGCAATTTTAAAATGGTTAGAAAAAA

>g4310.t4 Gene=g4310 Length=29
MQPSNCSIMRTTQEALTTVPQHFDAPLIN

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values