General information for g4310.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4310 is located on chr_2: 1123022..1126022 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4310 | g4310.t5 | isoform | g4310.t5 | 1121871 | 1124125 |
| chr_2 | g4310 | g4310.t5 | exon | g4310.t5.exon1 | 1121871 | 1123134 |
| chr_2 | g4310 | g4310.t5 | cds | g4310.t5.CDS1 | 1123022 | 1123111 |
| chr_2 | g4310 | g4310.t5 | exon | g4310.t5.exon2 | 1123327 | 1123419 |
| chr_2 | g4310 | g4310.t5 | exon | g4310.t5.exon3 | 1123477 | 1123804 |
| chr_2 | g4310 | g4310.t5 | exon | g4310.t5.exon4 | 1123865 | 1124005 |
| chr_2 | g4310 | g4310.t5 | exon | g4310.t5.exon5 | 1124078 | 1124125 |
| chr_2 | g4310 | g4310.t5 | TSS | g4310.t5 | NA | NA |
| chr_2 | g4310 | g4310.t5 | TTS | g4310.t5 | NA | NA |
Sequences
>g4310.t5 Gene=g4310 Length=1874
GTGCTATCAAGTCCAGTCATAAAACATCGTGTATTCTACTTTAGTAGACATGGTGAATCA
GAATTCAATGTGCTTGGTCGTATTGGTGGTGACGCAGATTTATCACCAAGAGGTAAAAAA
TATAGTGAAAATCTTGCTAAACAATTAGGTGGTCCAGGAAGTAGCCCTAATGCACCAAAG
CCAAGATTAATATGGACTTCAGAGCTCCAACGTACAATTCATACTGTTCAAAATATTCCC
GGACCACGAACAGCTCTCAAAGATCTTAATGAAATAAATGCAGGTATTTGTGAGGGTTTG
ACATATGAGGAAATTCAAGAGCGTTTTCCACAAGAATTTGCATGGCGTGACGCAGATAAA
TTGAAATATCGTTATCCCCATGGCGAGAGTTATTTGGATTTATTGCAAAGAGTTGATGGT
GTCGTTCAAGCACTTTTATTGAACACTGAAGTTTTGGTCGTATCACATCAAGCAGTTCTT
AGATGCATTTTAGCTTATTTCAAAGGAAGCAAACCAGAAGAAATTCCGTACGTCAATGTG
CCACTTCATACGCTTTTAATCGTAAAATCACATGGCTATGATTTCAAAATTGAAACTGTC
CCCTTAAAAGTGGAGTGCGTTGACACATATCGCATGCAGCCATCGAATTGCTCTATAATG
CGTACTACACAAGAAGCGCTTACCACAGTACCACAACATTTCGACGCACCGCTTATTAAT
TAACATAAGGAGGACTATGAATCTTCAAGAGCGCCAGCTAAGCAAATTAAATTAAGCAAT
TGAACTGCAAACTCATTACACATGATTCACTATTTTATTTTTTCGCTTCAATGCAAATGA
GAGAAAGACTTTACAGACAGTCTAAAAAATATTGAAAAACAAAAATAACTTTCATTATCA
TTCTTCTATTATTAATCGTTCTTCTGTCTTCGTAGTTTTAATTGATTTGACAAGCAAAAA
ACCTTTTTATTGTGTTTTTAAATAGTACTTTTTGTTTTTTCCTTATCATAATTCAAAATT
GCATTTTTTTGATTTTTTCTTTTCTGCCAATTTAAATAATCAATTTTTTTTTCAAACTAC
ATATCGCTCTATATTGTAGCACATACTAATTTTAGTTTTTCTTTTCTTTTTTAAAACTGT
AGTAATTTTGATTTTTTTAATAATTAAAATTTAATTTAATTTGATTGTGAGTTGAATTTT
TAGTTATATAATCAATGTATTTCTATATTTTTTATTCATAGACATAGCGTTTATTGACAA
GACTTTATTTCTATAGATAGACAAAGAACAAGTCAACAAAATTAATTTGAATTCATATTT
TAAAATAAAATTTTCTCCCAATGAGAAATGCAAGAAATTTTTACACAAAACATTTAAGTT
TAAGGAAAATTTTTACGCATGAAAAATTGGCAAATAGAATGTAATAATATTTCAATCAAA
AATAAGTTTTAAGAAAACAACTTTAATTTGACCGAAGTCTCTTTTAGATTTTTCCTCTAA
ATGACATTCAAGTTTCGATAGCACGTTTTTTTTCTTCAAGGTCATTTCTCGTCGAGAATA
TCATGAGAAATGAGAGAAAGAGTGGGGAAATGAAAGAAAATTTCACTTTCTTTCTTTTTT
TATTTGCCATATGCTCTGATGCTTTTTACATCTCATATTTAAGATAGAAGACAAAAAAAT
TATTTATAAATAATGAAGTGCACAACATATTTTTTGCTTAAAATTTATCACAATTTAAGA
GAGTAAAATAAAATTGATAATAAATTGGAACTTTAGATTACCTGATCCAAACACACAAAA
ATGAATTAAATAATAGAAAAAAGAGTATGATATTTAAATTATAAGTACATACATACACAA
GTTAAACTTCCAAA
>g4310.t5 Gene=g4310 Length=29
MQPSNCSIMRTTQEALTTVPQHFDAPLIN
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
