General information for g432.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as NAD(P) transhydrogenase, mitochondrial.
Parent gene
- The parent gene g432 is located on chr_3: 3334450..3335449 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g432 | g432.t3 | isoform | g432.t3 | 3334450 | 3335449 |
| chr_3 | g432 | g432.t3 | exon | g432.t3.exon1 | 3334450 | 3335207 |
| chr_3 | g432 | g432.t3 | cds | g432.t3.CDS1 | 3334730 | 3335207 |
| chr_3 | g432 | g432.t3 | exon | g432.t3.exon2 | 3335265 | 3335449 |
| chr_3 | g432 | g432.t3 | cds | g432.t3.CDS2 | 3335265 | 3335449 |
| chr_3 | g432 | g432.t3 | TTS | g432.t3 | 3335608 | 3335608 |
| chr_3 | g432 | g432.t3 | TSS | g432.t3 | NA | NA |
Sequences
>g432.t3 Gene=g432 Length=943
ATGGCAAAGTTTGAGATCTTACTTACTGCTGCAATCGGTGGCGCTGGTAAATTATTTTAT
TAACAATTCATCACAATTTAGAAATTTAATTGAATATTTATTTTCTTTTTAGACATGCCT
GTTGTTATTACTGTATTAAATTCATATTCTGGCTGGGCATTGTGTGCAGAAGGTTTCATG
TTGAACAACAATTTGATGACAATTGTTGGTGCTTTAATTGGAAGTTCTGGTGCAATTCTT
TCATATATTATGTGCAAAGCAATGAATCGTTCATTACCAAATGTCATTCTTGGAGGTAAA
TTTAAAAGAATTTTATGTAAAAAGTTTATATATTAAAATTATATTTTACATAGGATATGG
AACATCATCAACTGGAGGAGGCAAACCACAAGAAATTGTTGGAACGCATACGGAAGTTTC
AGTTGAAGGAACAGTCGAAATGATTAAAAATGCAAAGAACATTATCATCACACCCGGTTA
TGGTCTCTGTGTTGCTAAAGCTCAATATCCAATCGCAGAAATGGTCGACATTTTGAAGAA
AGCTGGAAAGAAAGTTCGCTTTGGTATTCATCCCGTTGCAGGTCGCATGCCTGGTCAACT
GAATGTTCTTTTGGCTGAAGCTGGTGTTAGTTACGATGATGTATTGGAAATGGAAGAAAT
TAATGATGACTTTCCTGAAACTGACTTAGTTTTGGTTATTGGTGCAAATGATACTGTCAA
CTCTGCTGCTGAAGATGATCCAAATTCAATTATTGCAGGTATGCCTGTATTGAGAGTATG
GAAGGCTGATCAAGTTGTAGTCATGAAGAGATCACTCGGTGTCGGTTATGCTGCAGTTGA
CAATCCAATTTTCTACAAACCAAATACTGCTATGTTGCTAGGTGACGCAAAGAAAACTTG
TGATGCACTTTTGGGCAAAATTAAGGAAGAAATAGTAAATTAA
>g432.t3 Gene=g432 Length=220
MSFLEVNLKEFYVKSLYIKIIFYIGYGTSSTGGGKPQEIVGTHTEVSVEGTVEMIKNAKN
IIITPGYGLCVAKAQYPIAEMVDILKKAGKKVRFGIHPVAGRMPGQLNVLLAEAGVSYDD
VLEMEEINDDFPETDLVLVIGANDTVNSAAEDDPNSIIAGMPVLRVWKADQVVVMKRSLG
VGYAAVDNPIFYKPNTAMLLGDAKKTCDALLGKIKEEIVN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g432.t3 | Gene3D | G3DSA:3.40.50.1220 | - | 37 | 219 | 0 |
| 2 | g432.t3 | PANTHER | PTHR10160:SF22 | NAD(P) TRANSHYDROGENASE, MITOCHONDRIAL | 23 | 217 | 0 |
| 3 | g432.t3 | PANTHER | PTHR10160 | NAD(P) TRANSHYDROGENASE | 23 | 217 | 0 |
| 1 | g432.t3 | Pfam | PF02233 | NAD(P) transhydrogenase beta subunit | 25 | 211 | 0 |
| 4 | g432.t3 | SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 42 | 216 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
