General information for g4335.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative N-acetylgalactosaminyltransferase 4.
Parent gene
- The parent gene g4335 is located on chr_2: 1387099..1388902 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4335 | g4335.t2 | isoform | g4335.t2 | 1384613 | 1386332 |
| chr_2 | g4335 | g4335.t2 | exon | g4335.t2.exon1 | 1384613 | 1385258 |
| chr_2 | g4335 | g4335.t2 | exon | g4335.t2.exon2 | 1385682 | 1386332 |
| chr_2 | g4335 | g4335.t2 | cds | g4335.t2.CDS1 | 1385757 | 1386332 |
| chr_2 | g4335 | g4335.t2 | TSS | g4335.t2 | NA | NA |
| chr_2 | g4335 | g4335.t2 | TTS | g4335.t2 | NA | NA |
Sequences
>g4335.t2 Gene=g4335 Length=1297
AGACAGCTGTAAACAATACAATACAAATGAAAATACTGAGAAATATAAAAACTCAACTCT
AGTCAGTCGTCTACTAAAATTGGCTTCGTCGACAGGTTTTTGTTTAAAACGTGCGAGAGA
GCTTTTTTCAGTGTGCCACGAATAAAAGCACTAAAAAGAGATTCTTAAAAATCATCAAAT
TCCGGTTCTCTTTGCTCTTCACACATATATTCAACTTCTCATCTTCGCAATATAAGTTTG
GAAGTGAAACAGTGACCAAGCCAAAAAATACGACTTAACTAAAAGTCAAGAGATTATTAT
TGAATTTCTTCTTGCTTCTTCATGCGGTTGTGTGTTGTTTTATTGGAAATATAAAAGAAA
GAGCAAGTGAGAGCGAGTGTGAACGCAAAGTTGTGTATTCATTACTTTTTTGGATGATAA
AATATAAACAGAGAGCCATTGAAGCTTATGTGTCAGTGCAGTTTCAAATTCGCTTATGAT
CGTGTGACTTTCGCGTTAATTTTTTAGTTGTTTTAACTTCATTGTGTATAATTTAGTTTT
TAGTTTCATACCTCGCATTGAGAAGAACGTATATATAAAAAGAGAAACGATGAAAATGTC
AATGAACCGGTTTCTATTAAGATTAAAATCACTTCTTCGATTACAGGTCTTAAAAAGCCG
AAAAAGTTTCACATATTTTATCAAATTTGTTGGTTCATTTCTAATAATATGCTTAATTGT
AATGATATCAGCCTACAAATTTATTCAACGAAATAATCATCCGCTTGCCATCACACAAAA
TTATATTTATATTGAGCCCATTTCCTCCTTCTTTCGTCGTGAACACAATCTTAATGGAGA
GAAAATAGATTGGCATGATTATGAATATTTGCAACGAGAAAAAGAGCAATTTGGAAAGCC
AGGTGAAAATGGACAGCCGGTGTATGCAGAACCTGGTGAGGAAGAGCTCGATAAACAGCT
ATTTGATGTAAATGGCTACAATGGTCTCATTTCTGATAAAATTGCATTAAACAGAAGTGT
TGCTGACTATAGGCACCAACAGTGCAAAAAAATAAAGTATCTTAAAGAACTTCCATCAGT
ATCAATTGTCATTCCATTTTACAATGATCATCTTTCTACTTTGTTGAGGACAGTCTATTC
AGTAATAAATAGAAGTCCAAAAGAACTACTAAAAGAAGTAATTCTAGTCAATGATCATTC
CACAAAAGACTTTCTCTATGGAGAATTAGAAGAATATATAGAGAAGCATTTGAAACACAT
TGTTAAACTTTATGTTTTACCTCGACGCTCTGGATTG
>g4335.t2 Gene=g4335 Length=192
MISAYKFIQRNNHPLAITQNYIYIEPISSFFRREHNLNGEKIDWHDYEYLQREKEQFGKP
GENGQPVYAEPGEEELDKQLFDVNGYNGLISDKIALNRSVADYRHQQCKKIKYLKELPSV
SIVIPFYNDHLSTLLRTVYSVINRSPKELLKEVILVNDHSTKDFLYGELEEYIEKHLKHI
VKLYVLPRRSGL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g4335.t2 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 39 | 192 | 0 |
| 2 | g4335.t2 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 52 | 192 | 0 |
| 3 | g4335.t2 | PANTHER | PTHR11675:SF101 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 1 | 52 | 192 | 0 |
| 1 | g4335.t2 | Pfam | PF00535 | Glycosyl transferase family 2 | 121 | 192 | 0 |
| 4 | g4335.t2 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 97 | 191 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
