General information for g4335.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative N-acetylgalactosaminyltransferase 6.
Parent gene
- The parent gene g4335 is located on chr_2: 1387099..1388902 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4335 | g4335.t6 | isoform | g4335.t6 | 1386734 | 1388321 |
| chr_2 | g4335 | g4335.t6 | exon | g4335.t6.exon1 | 1386734 | 1387251 |
| chr_2 | g4335 | g4335.t6 | cds | g4335.t6.CDS1 | 1386946 | 1387209 |
| chr_2 | g4335 | g4335.t6 | exon | g4335.t6.exon2 | 1387518 | 1387712 |
| chr_2 | g4335 | g4335.t6 | exon | g4335.t6.exon3 | 1387771 | 1387837 |
| chr_2 | g4335 | g4335.t6 | exon | g4335.t6.exon4 | 1387921 | 1388321 |
| chr_2 | g4335 | g4335.t6 | TTS | g4335.t6 | 1388421 | 1388421 |
| chr_2 | g4335 | g4335.t6 | TSS | g4335.t6 | NA | NA |
Sequences
>g4335.t6 Gene=g4335 Length=1181
GCTTAGCTGGTGCTCGTGCTGCGAGTGGCGATGTGTTACTTTTCCTCGATTCACATACTG
AAGCGTCAACAAATTTCTTGCCACCACTTATTGAACCAATTGCTAAAGATTATCGTACAT
GTGTTTGTCCTTTTGTTGATGTAATTGATTTCAAGACTTTTGCCTATCATCCACAAGGCG
ATGGAAGTAGAGGAATTTTCGATTGGAACGGAATGCATTATCATCATATGCCACTAAGAC
CTGGTGATCAAGAACATCCATGGTCACTTTATGAAAATCCTGTCATGGTCGGTGGATTGT
TTGCAATATCAGCTAAATTCTTTTGGGAACTGGGCGGTTATGACCCAGGTCTAGATATCT
GGGGAGGTGAACAATACGAATTGAGTTTTAAAATTTGGCTTTGTGGTGGCAAAATGTATG
ATGCACCGTGCTCAAGAATTGGTAATCAAGAGTTTAAAAATCAATGTAATTCATAAATTT
AAACAATTTTTATATTAAAATAGGTCATGTTTTTAGAGGACGAATACAAAGAGTATTTGT
ATAAAAGAGATCCTGACCGATATGCACGAGTGAGTGCTGGAGACTTAAGCTATCAATTTT
ATATTAAAAAGAGGCAACAATGCAAACCATTCAAATATTTTTTGGATGTGGTAGCACCAG
ATATGAAGGAACGATATCCACTAGAGGAACCACCAGAATTTGCTTCAGGCGCTATTCAAT
CGATGGCCGATGAAAAGTTTTGCATCGATAAACTGAATCGTCCGAAAGAGCAACCTTTAG
GAATTTATTATTGTGGTGAAAACAAGAAACGTCCACAGAACAATCAACATTTTATATTGC
GTTATTATCGTGATATTGCTGATGCTGATATGGAATCATGCTTTGATTCATTTGGTGTAG
GTGAAAAAAGAGAACTAAAAACATTCTCGTGCCATCATGGACAGGGAAATCAATATTTCC
GATATGATTTAAATACAAAGCAAATATTTCATGGACCAGTTCGTAACAAGCATTGTGTTG
AAGTTAATATAGGAACTCAATCAGTTTATGTGACAACATGCAATGATAAAAAATTGGAAC
AGAAATGGAAATGGGGTTTTGTCAATGAAACAAACATTCGAAATTGGGCAACATATGGTT
CACCTATAATGGATGCACAAGAAGTAAAAGATTTATCCTGA
>g4335.t6 Gene=g4335 Length=87
MHYHHMPLRPGDQEHPWSLYENPVMVGGLFAISAKFFWELGGYDPGLDIWGGEQYELSFK
IWLCGGKMYDAPCSRIGNQEFKNQCNS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g4335.t6 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 1 | 86 | 0e+00 |
| 2 | g4335.t6 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 1 | 78 | 0e+00 |
| 3 | g4335.t6 | PANTHER | PTHR11675:SF40 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE-LIKE 6 | 1 | 78 | 0e+00 |
| 1 | g4335.t6 | Pfam | PF02709 | N-terminal domain of galactosyltransferase | 17 | 77 | 1e-07 |
| 4 | g4335.t6 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 20 | 77 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
