General information for g4336.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as N-acetylgalactosaminyltransferase 4.
Parent gene
- The parent gene g4336 is located on chr_2: 1391277..1392233 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4336 | g4336.t7 | TSS | g4336.t7 | 1389059 | 1389059 |
| chr_2 | g4336 | g4336.t7 | isoform | g4336.t7 | 1389203 | 1391939 |
| chr_2 | g4336 | g4336.t7 | exon | g4336.t7.exon1 | 1389203 | 1389241 |
| chr_2 | g4336 | g4336.t7 | exon | g4336.t7.exon2 | 1389756 | 1390216 |
| chr_2 | g4336 | g4336.t7 | exon | g4336.t7.exon3 | 1390283 | 1390579 |
| chr_2 | g4336 | g4336.t7 | exon | g4336.t7.exon4 | 1390736 | 1391195 |
| chr_2 | g4336 | g4336.t7 | cds | g4336.t7.CDS1 | 1390959 | 1391195 |
| chr_2 | g4336 | g4336.t7 | exon | g4336.t7.exon5 | 1391250 | 1391450 |
| chr_2 | g4336 | g4336.t7 | cds | g4336.t7.CDS2 | 1391250 | 1391450 |
| chr_2 | g4336 | g4336.t7 | exon | g4336.t7.exon6 | 1391514 | 1391939 |
| chr_2 | g4336 | g4336.t7 | cds | g4336.t7.CDS3 | 1391514 | 1391939 |
| chr_2 | g4336 | g4336.t7 | TTS | g4336.t7 | 1392013 | 1392013 |
Sequences
>g4336.t7 Gene=g4336 Length=1884
ATGAGCTCAAATAGTGTAAAAAGATTGCTTTTGAGACACTGCAAAGGCAGAAGTTCTCTT
ATCAAACTTATCATAAATTTTACAATTGTTGGCTGTGTCTGTTTGTTTTTACTCTCACAA
CTGTATAAACATAGTTCATCATCAAAAAATGAAGATGATTTGCCAATTGCAGAAGAATTG
ATTCAAGAAAAGGCCTTTAAACCGCGACCAATCGTTTTACCGTTAATTGAGGAAGAAGAT
TTTCAATATATTGAGCCAAAAACATCATTTTTCAAACAAAAACATAATGTTCTGATGAAA
AGAAAAGACTGGCATGATTATGAGCATATACAGATGGAGAAAAATAGAAAAGGACCGGGT
GAACAGGGAAAATCATTCCGTCTTACTGATCCGAATGATATCGAAATTAATAATGAATTA
TTAAAAGTTAATGGCTATTGGGCTCGTGCTTCTGATATAATTTCTGTAAATCGATCAGTC
AATGATATCAGACATCCACTATGTCAAAAGAAGAAATATTTACTAGAACTTCCAACCGCT
TCAGTGATAATTCCATTTTTCAATGATCATTTGTCTGTTCTAATGCGAACAGTTCATAGC
TGTATAAATCGTGCTCCGGCTCATCTACTTAAAGAAGTAATTCTCGTCAATGATCATTCA
ACAAAGACAGAACTCTATGATGAATTAAAAAAATATTTAGCTGAAAATTTTGATGGCAAA
GCACATGTAGTTGATTTGCCAAAAAGATCAGGATTGATTACAGCCAGACTTGCAGGTTTG
TTGATATCTGATTAATTTGCATAAATTTATAAAAATATTTTATTTCAATTAGATCCAATT
GCTGAAGACTATCGAACATGTGTTTGTCCATTTATTGATGTAATTGATGCACAAGATTAT
CAATATAGAGCTCAAGATGAAGGAAATAGGGGTGCTTTTGAATGGAATTTCTTATATAAA
AGAATTGACATCAGACCAGGTGATCAAGAGACGCCTGCTGACAATTTTCCTTCTCCCGTA
ATGGCTGGAGGTCTTTTTGCAATATCAGCAAAATTCTTTTGGGAACTGGGCGGTTATGAC
TCAGGACTAGATATCTGGGGAGGTGAACAATACGAATTGAGTTTTAAAATTTGGCTCTGT
GGTGGCACCATGGTCGATTCACCGTGCTCAAGAATTGGGCATATTTACAAATCAAATCCA
TTTCCTGATCCAAGAGGATATGACTATGTGTCAAAGAATTTTAAAAGAGTTGCTGAAGTA
TGGATGGACGAATATAAAGAATACATTTATCAACGTAAACCAGAAAGATTTTCAAAAGTT
GATGTCGGTGACATTTCAAAACAATTAGAGATCAAAAAGAAAAATAAATGCAAACCATTC
AGTTATTTCCTTGAAGTAGTTGCTCCAGATATGCTTGAAAAATATCCGCCAACACAAATT
GAATTTGCTAGTGGCACAATTGAAAGTGTAGCTTTTGGTGACTATTGTATTGACTCAATG
GGACAATTTTATCACGACCTTGGACTTTATAGATGTTCATACAATAAAAAACATCCATCA
GGTCATCAACATTTCTTCCTTGGCCATAATCGAGATATTGAATTTTATTCAGATGCAGCC
TATTGTATTGATTCATACGGTTCAAGTATCAGACTTGCAGCTTGTCATCATCGGCAAGGT
ACTCAATATTTCCGTTATGATCTCGATACACAACATATTTATAGTCAAAAAGATGAACGC
AAGTGCCTCGAAGCTGATTCTGCACGAAAAAAAATTGTCGTCAGTCGATGCAAAGATGAT
GAAATTAAGCAAAAATGGAAGTGGGGAAATGTGAATGAAGACAATCTCAGACATTGGGAA
GAGCGTGGTGCTAAAATAAAATAA
>g4336.t7 Gene=g4336 Length=287
MAGGLFAISAKFFWELGGYDSGLDIWGGEQYELSFKIWLCGGTMVDSPCSRIGHIYKSNP
FPDPRGYDYVSKNFKRVAEVWMDEYKEYIYQRKPERFSKVDVGDISKQLEIKKKNKCKPF
SYFLEVVAPDMLEKYPPTQIEFASGTIESVAFGDYCIDSMGQFYHDLGLYRCSYNKKHPS
GHQHFFLGHNRDIEFYSDAAYCIDSYGSSIRLAACHHRQGTQYFRYDLDTQHIYSQKDER
KCLEADSARKKIVVSRCKDDEIKQKWKWGNVNEDNLRHWEERGAKIK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g4336.t7 | CDD | cd00161 | RICIN | 145 | 268 | 0.000000 |
| 9 | g4336.t7 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 1 | 138 | 0.000000 |
| 8 | g4336.t7 | Gene3D | G3DSA:2.80.10.50 | - | 139 | 282 | 0.000000 |
| 3 | g4336.t7 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 1 | 267 | 0.000000 |
| 4 | g4336.t7 | PANTHER | PTHR11675:SF68 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE | 1 | 267 | 0.000000 |
| 1 | g4336.t7 | Pfam | PF02709 | N-terminal domain of galactosyltransferase | 2 | 56 | 0.000022 |
| 2 | g4336.t7 | Pfam | PF00652 | Ricin-type beta-trefoil lectin domain | 144 | 266 | 0.000000 |
| 10 | g4336.t7 | ProSiteProfiles | PS50231 | Lectin domain of ricin B chain profile. | 143 | 269 | 15.976000 |
| 7 | g4336.t7 | SMART | SM00458 | ricin_3 | 143 | 269 | 0.000000 |
| 6 | g4336.t7 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 2 | 130 | 0.000000 |
| 5 | g4336.t7 | SUPERFAMILY | SSF50370 | Ricin B-like lectins | 142 | 270 | 0.000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
