Gene loci information

Transcript annotation

  • This transcript has been annotated as Uricase .

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4344 g4344.t3 TSS g4344.t3 1425138 1425138
chr_2 g4344 g4344.t3 isoform g4344.t3 1425198 1426325
chr_2 g4344 g4344.t3 exon g4344.t3.exon1 1425198 1425255
chr_2 g4344 g4344.t3 cds g4344.t3.CDS1 1425253 1425255
chr_2 g4344 g4344.t3 exon g4344.t3.exon2 1425496 1425712
chr_2 g4344 g4344.t3 cds g4344.t3.CDS2 1425496 1425712
chr_2 g4344 g4344.t3 exon g4344.t3.exon3 1425779 1425905
chr_2 g4344 g4344.t3 cds g4344.t3.CDS3 1425779 1425905
chr_2 g4344 g4344.t3 exon g4344.t3.exon4 1425974 1426325
chr_2 g4344 g4344.t3 cds g4344.t3.CDS4 1425974 1426325
chr_2 g4344 g4344.t3 TTS g4344.t3 1426502 1426502

Sequences

>g4344.t3 Gene=g4344 Length=754
ATGCCAATCAATAATCAAATGCAGGATAGTAAGTTTGTTATCGATAAAACAAATTATGAA
GTATGGCATAAAATCCCCAGAGGATTTCGGAATTTTATTGAGTTCTCATTTTATCACCAA
ATATGCGCACGTGACGAAAGCTGTAGTGAATATTCAAGAAGTCATGTGGAATAGAGTGAG
TTATGGCGATCATGCAAATAGCAAGTTGCATAATCATGCCTTCATTCATACACCAATATG
TACGAGAATCACGAATGTTGTTCTTAATCGCGAAGATAAATATCCATCTATCTCAAGTGG
AATCAAAGATTTGCGTGTTTTAAAAACGACACAAAGTTCTTTTATGAATTTTGTTAATGA
TGAATATCGCTCGCTGCCAGACGCTGATGATAGAATTTTTAGTACAATCGTTGATTGCTC
TTGGATTTATTCGCCAAATCCAAATGTTGATTTTTGTAAAGTTTTTGATTCTGTAAAAAA
TTCCATTATATTTAATTTTGCTGGTGATCTAGAAAAGGGAATTGCATCAGCAAGTGTTCA
AAATACAATTTATATCACTGAAAAAGATGTTCTTGAGAAAATCAAAGATATTAAATCTAT
TGAAATGACGCTGCCAAATAAGCATTATATTAACTTTAATTTTGCACCCTTTAAGTCGAT
TGTTTATGACGATGAACAGACTGTTTTCATCCCATTAGATAAACCATCAGGTGTCATTTA
TGCAAAATTGGATAGAAAAATAAGTAAACTGTAA

>g4344.t3 Gene=g4344 Length=232
MKYGIKSPEDFGILLSSHFITKYAHVTKAVVNIQEVMWNRVSYGDHANSKLHNHAFIHTP
ICTRITNVVLNREDKYPSISSGIKDLRVLKTTQSSFMNFVNDEYRSLPDADDRIFSTIVD
CSWIYSPNPNVDFCKVFDSVKNSIIFNFAGDLEKGIASASVQNTIYITEKDVLEKIKDIK
SIEMTLPNKHYINFNFAPFKSIVYDDEQTVFIPLDKPSGVIYAKLDRKISKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g4344.t3 Gene3D G3DSA:3.10.270.10 Urate Oxidase; 1 232 4.6E-77
3 g4344.t3 PANTHER PTHR42874 URICASE 4 232 8.5E-75
4 g4344.t3 PRINTS PR00093 Uricase signature 18 31 2.0E-15
6 g4344.t3 PRINTS PR00093 Uricase signature 86 102 2.0E-15
5 g4344.t3 PRINTS PR00093 Uricase signature 102 114 2.0E-15
2 g4344.t3 Pfam PF01014 Uricase 2 68 3.0E-12
1 g4344.t3 Pfam PF01014 Uricase 80 221 4.5E-27
9 g4344.t3 ProSitePatterns PS00366 Uricase signature. 86 113 -
8 g4344.t3 SUPERFAMILY SSF55620 Tetrahydrobiopterin biosynthesis enzymes-like 2 70 2.59E-13
7 g4344.t3 SUPERFAMILY SSF55620 Tetrahydrobiopterin biosynthesis enzymes-like 77 228 3.48E-46
11 g4344.t3 TIGRFAM TIGR03383 urate_oxi: urate oxidase 2 227 2.4E-66

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006144 purine nucleobase metabolic process BP
GO:0055114 NA NA
GO:0004846 urate oxidase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed