Gene loci information

Transcript annotation

  • This transcript has been annotated as Uricase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4344 g4344.t5 TSS g4344.t5 1425138 1425138
chr_2 g4344 g4344.t5 isoform g4344.t5 1425198 1426325
chr_2 g4344 g4344.t5 exon g4344.t5.exon1 1425198 1425294
chr_2 g4344 g4344.t5 cds g4344.t5.CDS1 1425198 1425294
chr_2 g4344 g4344.t5 exon g4344.t5.exon2 1425359 1425712
chr_2 g4344 g4344.t5 cds g4344.t5.CDS2 1425359 1425712
chr_2 g4344 g4344.t5 exon g4344.t5.exon3 1425779 1425905
chr_2 g4344 g4344.t5 cds g4344.t5.CDS3 1425779 1425905
chr_2 g4344 g4344.t5 exon g4344.t5.exon4 1425974 1426043
chr_2 g4344 g4344.t5 cds g4344.t5.CDS4 1425974 1426043
chr_2 g4344 g4344.t5 exon g4344.t5.exon5 1426282 1426325
chr_2 g4344 g4344.t5 cds g4344.t5.CDS5 1426282 1426314
chr_2 g4344 g4344.t5 TTS g4344.t5 1426502 1426502

Sequences

>g4344.t5 Gene=g4344 Length=692
ATGCCAATCAATAATCAAATGCAGGATAGTAAGTTTGTTATCGATAAAACAAATTATGGT
AAGACTGGAGTGAAAATTCTTCATCTTGTTAGAAATGGTCTAGTTCATACTGTTAAAGAA
TATGAAGTGACAACACTTCTTACACTCGATACACTAAAAGATTTTATGCAAGCTGACAAC
TCTGACATCATTGCCACTGACTCGCAGAAAAACACTGTCTATATTCTTGCTAAGAAGTAT
GGCATAAAATCCCCAGAGGATTTCGGAATTTTATTGAGTTCTCATTTTATCACCAAATAT
GCGCACGTGACGAAAGCTGTAGTGAATATTCAAGAAGTCATGTGGAATAGAGTGAGTTAT
GGCGATCATGCAAATAGCAAGTTGCATAATCATGCCTTCATTCATACACCAATATGTACG
AGAATCACGAATGTTGTTCTTAATCGCGAAGATAAATATCCATCTATCTCAAGTGGAATC
AAAGATTTGCGTGTTTTAAAAACGACACAAAGTTCTTTTATGAATTTTGTTAATGATGAA
TATCGCTCGCTGCCAGACGCTGATGATAGAATTTTTAGTACAATCGTTGATTGCTCTTGG
ATTTATTCGCCAAATCCAAATGTTGATTTTTGTAAAGTTTTTGATTCTGTGTCATTTATG
CAAAATTGGATAGAAAAATAAGTAAACTGTAA

>g4344.t5 Gene=g4344 Length=226
MPINNQMQDSKFVIDKTNYGKTGVKILHLVRNGLVHTVKEYEVTTLLTLDTLKDFMQADN
SDIIATDSQKNTVYILAKKYGIKSPEDFGILLSSHFITKYAHVTKAVVNIQEVMWNRVSY
GDHANSKLHNHAFIHTPICTRITNVVLNREDKYPSISSGIKDLRVLKTTQSSFMNFVNDE
YRSLPDADDRIFSTIVDCSWIYSPNPNVDFCKVFDSVSFMQNWIEK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g4344.t5 Gene3D G3DSA:3.10.270.10 Urate Oxidase; 3 224 4.7E-75
3 g4344.t5 PANTHER PTHR42874 URICASE 11 217 4.4E-68
8 g4344.t5 PRINTS PR00093 Uricase signature 20 31 1.0E-27
4 g4344.t5 PRINTS PR00093 Uricase signature 59 73 1.0E-27
6 g4344.t5 PRINTS PR00093 Uricase signature 95 108 1.0E-27
7 g4344.t5 PRINTS PR00093 Uricase signature 163 179 1.0E-27
5 g4344.t5 PRINTS PR00093 Uricase signature 179 191 1.0E-27
2 g4344.t5 Pfam PF01014 Uricase 18 145 1.4E-36
1 g4344.t5 Pfam PF01014 Uricase 157 196 1.9E-9
11 g4344.t5 ProSitePatterns PS00366 Uricase signature. 163 190 -
10 g4344.t5 SUPERFAMILY SSF55620 Tetrahydrobiopterin biosynthesis enzymes-like 14 147 8.89E-41
9 g4344.t5 SUPERFAMILY SSF55620 Tetrahydrobiopterin biosynthesis enzymes-like 154 209 8.34E-21
13 g4344.t5 TIGRFAM TIGR03383 urate_oxi: urate oxidase 15 217 6.0E-69

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006144 purine nucleobase metabolic process BP
GO:0055114 NA NA
GO:0004846 urate oxidase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed