Gene loci information

Transcript annotation

  • This transcript has been annotated as Uricase .

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4344 g4344.t6 TSS g4344.t6 1425138 1425138
chr_2 g4344 g4344.t6 isoform g4344.t6 1425198 1426325
chr_2 g4344 g4344.t6 exon g4344.t6.exon1 1425198 1425294
chr_2 g4344 g4344.t6 cds g4344.t6.CDS1 1425198 1425294
chr_2 g4344 g4344.t6 exon g4344.t6.exon2 1425365 1425712
chr_2 g4344 g4344.t6 cds g4344.t6.CDS2 1425365 1425712
chr_2 g4344 g4344.t6 exon g4344.t6.exon3 1425779 1425905
chr_2 g4344 g4344.t6 cds g4344.t6.CDS3 1425779 1425905
chr_2 g4344 g4344.t6 exon g4344.t6.exon4 1425974 1426325
chr_2 g4344 g4344.t6 cds g4344.t6.CDS4 1425974 1426325
chr_2 g4344 g4344.t6 TTS g4344.t6 1426502 1426502

Sequences

>g4344.t6 Gene=g4344 Length=924
ATGCCAATCAATAATCAAATGCAGGATAGTAAGTTTGTTATCGATAAAACAAATTATGGT
AAGACTGGAGTGAAAATTCTTCATCTTGTTAGAAATGTTCATACTGTTAAAGAATATGAA
GTGACAACACTTCTTACACTCGATACACTAAAAGATTTTATGCAAGCTGACAACTCTGAC
ATCATTGCCACTGACTCGCAGAAAAACACTGTCTATATTCTTGCTAAGAAGTATGGCATA
AAATCCCCAGAGGATTTCGGAATTTTATTGAGTTCTCATTTTATCACCAAATATGCGCAC
GTGACGAAAGCTGTAGTGAATATTCAAGAAGTCATGTGGAATAGAGTGAGTTATGGCGAT
CATGCAAATAGCAAGTTGCATAATCATGCCTTCATTCATACACCAATATGTACGAGAATC
ACGAATGTTGTTCTTAATCGCGAAGATAAATATCCATCTATCTCAAGTGGAATCAAAGAT
TTGCGTGTTTTAAAAACGACACAAAGTTCTTTTATGAATTTTGTTAATGATGAATATCGC
TCGCTGCCAGACGCTGATGATAGAATTTTTAGTACAATCGTTGATTGCTCTTGGATTTAT
TCGCCAAATCCAAATGTTGATTTTTGTAAAGTTTTTGATTCTGTAAAAAATTCCATTATA
TTTAATTTTGCTGGTGATCTAGAAAAGGGAATTGCATCAGCAAGTGTTCAAAATACAATT
TATATCACTGAAAAAGATGTTCTTGAGAAAATCAAAGATATTAAATCTATTGAAATGACG
CTGCCAAATAAGCATTATATTAACTTTAATTTTGCACCCTTTAAGTCGATTGTTTATGAC
GATGAACAGACTGTTTTCATCCCATTAGATAAACCATCAGGTGTCATTTATGCAAAATTG
GATAGAAAAATAAGTAAACTGTAA

>g4344.t6 Gene=g4344 Length=307
MPINNQMQDSKFVIDKTNYGKTGVKILHLVRNVHTVKEYEVTTLLTLDTLKDFMQADNSD
IIATDSQKNTVYILAKKYGIKSPEDFGILLSSHFITKYAHVTKAVVNIQEVMWNRVSYGD
HANSKLHNHAFIHTPICTRITNVVLNREDKYPSISSGIKDLRVLKTTQSSFMNFVNDEYR
SLPDADDRIFSTIVDCSWIYSPNPNVDFCKVFDSVKNSIIFNFAGDLEKGIASASVQNTI
YITEKDVLEKIKDIKSIEMTLPNKHYINFNFAPFKSIVYDDEQTVFIPLDKPSGVIYAKL
DRKISKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g4344.t6 Gene3D G3DSA:3.10.270.10 Urate Oxidase; 3 307 7.7E-105
3 g4344.t6 PANTHER PTHR42874 URICASE 11 307 2.7E-100
12 g4344.t6 PIRSF PIRSF000241 Urate_oxidase 3 307 4.6E-102
8 g4344.t6 PRINTS PR00093 Uricase signature 20 31 3.4E-27
6 g4344.t6 PRINTS PR00093 Uricase signature 57 71 3.4E-27
7 g4344.t6 PRINTS PR00093 Uricase signature 93 106 3.4E-27
4 g4344.t6 PRINTS PR00093 Uricase signature 161 177 3.4E-27
5 g4344.t6 PRINTS PR00093 Uricase signature 177 189 3.4E-27
2 g4344.t6 Pfam PF01014 Uricase 18 143 1.4E-35
1 g4344.t6 Pfam PF01014 Uricase 155 296 9.5E-27
13 g4344.t6 ProSitePatterns PS00366 Uricase signature. 161 188 -
10 g4344.t6 SUPERFAMILY SSF55620 Tetrahydrobiopterin biosynthesis enzymes-like 14 145 6.67E-39
9 g4344.t6 SUPERFAMILY SSF55620 Tetrahydrobiopterin biosynthesis enzymes-like 152 303 7.41E-46
14 g4344.t6 TIGRFAM TIGR03383 urate_oxi: urate oxidase 15 302 9.1E-91

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006144 purine nucleobase metabolic process BP
GO:0055114 NA NA
GO:0004846 urate oxidase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed