Gene loci information

Transcript annotation

  • This transcript has been annotated as Uricase .

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4344 g4344.t7 TSS g4344.t7 1425138 1425138
chr_2 g4344 g4344.t7 isoform g4344.t7 1425198 1426452
chr_2 g4344 g4344.t7 exon g4344.t7.exon1 1425198 1425294
chr_2 g4344 g4344.t7 cds g4344.t7.CDS1 1425198 1425294
chr_2 g4344 g4344.t7 exon g4344.t7.exon2 1425359 1425712
chr_2 g4344 g4344.t7 cds g4344.t7.CDS2 1425359 1425712
chr_2 g4344 g4344.t7 exon g4344.t7.exon3 1425779 1425905
chr_2 g4344 g4344.t7 cds g4344.t7.CDS3 1425779 1425905
chr_2 g4344 g4344.t7 exon g4344.t7.exon4 1425974 1426241
chr_2 g4344 g4344.t7 cds g4344.t7.CDS4 1425974 1426241
chr_2 g4344 g4344.t7 exon g4344.t7.exon5 1426388 1426452
chr_2 g4344 g4344.t7 cds g4344.t7.CDS5 1426388 1426393
chr_2 g4344 g4344.t7 TTS g4344.t7 1426502 1426502

Sequences

>g4344.t7 Gene=g4344 Length=911
ATGCCAATCAATAATCAAATGCAGGATAGTAAGTTTGTTATCGATAAAACAAATTATGGT
AAGACTGGAGTGAAAATTCTTCATCTTGTTAGAAATGGTCTAGTTCATACTGTTAAAGAA
TATGAAGTGACAACACTTCTTACACTCGATACACTAAAAGATTTTATGCAAGCTGACAAC
TCTGACATCATTGCCACTGACTCGCAGAAAAACACTGTCTATATTCTTGCTAAGAAGTAT
GGCATAAAATCCCCAGAGGATTTCGGAATTTTATTGAGTTCTCATTTTATCACCAAATAT
GCGCACGTGACGAAAGCTGTAGTGAATATTCAAGAAGTCATGTGGAATAGAGTGAGTTAT
GGCGATCATGCAAATAGCAAGTTGCATAATCATGCCTTCATTCATACACCAATATGTACG
AGAATCACGAATGTTGTTCTTAATCGCGAAGATAAATATCCATCTATCTCAAGTGGAATC
AAAGATTTGCGTGTTTTAAAAACGACACAAAGTTCTTTTATGAATTTTGTTAATGATGAA
TATCGCTCGCTGCCAGACGCTGATGATAGAATTTTTAGTACAATCGTTGATTGCTCTTGG
ATTTATTCGCCAAATCCAAATGTTGATTTTTGTAAAGTTTTTGATTCTGTAAAAAATTCC
ATTATATTTAATTTTGCTGGTGATCTAGAAAAGGGAATTGCATCAGCAAGTGTTCAAAAT
ACAATTTATATCACTGAAAAAGATGTTCTTGAGAAAATCAAAGATATTAAATCTATTGAA
ATGACGCTGCCAAATAAGCATTATATTAACTTTAATTTTGCACCCTTTAAGTCGATTGTT
TATGACAGATAATGTTCATAATATTTTTGTTTTGCTTTTAATTATTGTTGAACTTGAATC
TACTATATTAT

>g4344.t7 Gene=g4344 Length=283
MPINNQMQDSKFVIDKTNYGKTGVKILHLVRNGLVHTVKEYEVTTLLTLDTLKDFMQADN
SDIIATDSQKNTVYILAKKYGIKSPEDFGILLSSHFITKYAHVTKAVVNIQEVMWNRVSY
GDHANSKLHNHAFIHTPICTRITNVVLNREDKYPSISSGIKDLRVLKTTQSSFMNFVNDE
YRSLPDADDRIFSTIVDCSWIYSPNPNVDFCKVFDSVKNSIIFNFAGDLEKGIASASVQN
TIYITEKDVLEKIKDIKSIEMTLPNKHYINFNFAPFKSIVYDR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g4344.t7 Gene3D G3DSA:3.10.270.10 Urate Oxidase; 3 282 1.6E-97
3 g4344.t7 PANTHER PTHR42874 URICASE 11 277 3.2E-91
12 g4344.t7 PIRSF PIRSF000241 Urate_oxidase 3 282 1.1E-94
8 g4344.t7 PRINTS PR00093 Uricase signature 20 31 2.5E-27
4 g4344.t7 PRINTS PR00093 Uricase signature 59 73 2.5E-27
6 g4344.t7 PRINTS PR00093 Uricase signature 95 108 2.5E-27
7 g4344.t7 PRINTS PR00093 Uricase signature 163 179 2.5E-27
5 g4344.t7 PRINTS PR00093 Uricase signature 179 191 2.5E-27
2 g4344.t7 Pfam PF01014 Uricase 18 145 2.5E-36
1 g4344.t7 Pfam PF01014 Uricase 157 273 5.4E-24
13 g4344.t7 ProSitePatterns PS00366 Uricase signature. 163 190 -
9 g4344.t7 SUPERFAMILY SSF55620 Tetrahydrobiopterin biosynthesis enzymes-like 14 147 1.63E-40
10 g4344.t7 SUPERFAMILY SSF55620 Tetrahydrobiopterin biosynthesis enzymes-like 154 278 3.71E-39
14 g4344.t7 TIGRFAM TIGR03383 urate_oxi: urate oxidase 15 278 7.0E-87

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006144 purine nucleobase metabolic process BP
GO:0055114 NA NA
GO:0004846 urate oxidase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed