General information for g4344.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Uricase .
Parent gene
- The parent gene g4344 is located on chr_2: 1426325..1432855 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4344 | g4344.t8 | TSS | g4344.t8 | 1425138 | 1425138 |
| chr_2 | g4344 | g4344.t8 | isoform | g4344.t8 | 1425198 | 1426521 |
| chr_2 | g4344 | g4344.t8 | exon | g4344.t8.exon1 | 1425198 | 1426521 |
| chr_2 | g4344 | g4344.t8 | cds | g4344.t8.CDS1 | 1425427 | 1425747 |
| chr_2 | g4344 | g4344.t8 | TTS | g4344.t8 | 1426502 | 1426502 |
Sequences
>g4344.t8 Gene=g4344 Length=1324
ATGCCAATCAATAATCAAATGCAGGATAGTAAGTTTGTTATCGATAAAACAAATTATGGT
AAGACTGGAGTGAAAATTCTTCATCTTGTTAGAAATGGTAAGTTGACAGTAAATTGTGTT
CATATGTCACTTGATACAAGGAAAAAATTACTTCAAATCAGGTCTAGTTCATACTGTTAA
AGAATATGAAGTGACAACACTTCTTACACTCGATACACTAAAAGATTTTATGCAAGCTGA
CAACTCTGACATCATTGCCACTGACTCGCAGAAAAACACTGTCTATATTCTTGCTAAGAA
GTATGGCATAAAATCCCCAGAGGATTTCGGAATTTTATTGAGTTCTCATTTTATCACCAA
ATATGCGCACGTGACGAAAGCTGTAGTGAATATTCAAGAAGTCATGTGGAATAGAGTGAG
TTATGGCGATCATGCAAATAGCAAGTTGCATAATCATGCCTTCATTCATACACCAATATG
TACGAGAATCACGAATGTTGTTCTTAATCGCGAAGGTATAATTATTGAAATCATGAGACA
CTGGTTTTAATTTTTTTCTCATCAATTTTATTGTTTTTTAGATAAATATCCATCTATCTC
AAGTGGAATCAAAGATTTGCGTGTTTTAAAAACGACACAAAGTTCTTTTATGAATTTTGT
TAATGATGAATATCGCTCGCTGCCAGACGCTGATGATAGAATTTTTAGGTAATTAGCAAA
AAATTAATTTCTCAAATGTGGTTCTAAATTTATTTTTTGTATATTTTTTGCTATAGTACA
ATCGTTGATTGCTCTTGGATTTATTCGCCAAATCCAAATGTTGATTTTTGTAAAGTTTTT
GATTCTGTAAAAAATTCCATTATATTTAATTTTGCTGGTGATCTAGAAAAGGGAATTGCA
TCAGCAAGTGTTCAAAATACAATTTATATCACTGAAAAAGATGTTCTTGAGAAAATCAAA
GATATTAAATCTATTGAAATGACGCTGCCAAATAAGCATTATATTAACTTTAATTTTGCA
CCCTTTAAGTCGATTGTTTATGACGATGAACAGACTGTTTTCATCCCATTAGATAAACCA
TCAGGTGTCATTTATGCAAAATTGGATAGAAAAATAAGTAAACTGTAAGATAAGACTTTA
TCAAAACGTGACTCATAAGTCATTAAGATTTTATTTGCTCATATATAAAGAGATAATGTT
CATAATATTTTTGTTTTGCTTTTAATTATTGTTGAACTTGAATCTACTATATTATCTGTA
ATTAAATAAAACAATATATATATCAAATAAAACTTATCTTAATTAAATATGTCAACAACT
TACA
>g4344.t8 Gene=g4344 Length=106
MQADNSDIIATDSQKNTVYILAKKYGIKSPEDFGILLSSHFITKYAHVTKAVVNIQEVMW
NRVSYGDHANSKLHNHAFIHTPICTRITNVVLNREGIIIEIMRHWF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g4344.t8 | Gene3D | G3DSA:3.10.270.10 | Urate Oxidase; | 1 | 104 | 0 |
| 2 | g4344.t8 | PANTHER | PTHR42874 | URICASE | 2 | 97 | 0 |
| 3 | g4344.t8 | PRINTS | PR00093 | Uricase signature | 4 | 18 | 0 |
| 4 | g4344.t8 | PRINTS | PR00093 | Uricase signature | 40 | 53 | 0 |
| 1 | g4344.t8 | Pfam | PF01014 | Uricase | 2 | 90 | 0 |
| 5 | g4344.t8 | SUPERFAMILY | SSF55620 | Tetrahydrobiopterin biosynthesis enzymes-like | 2 | 92 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed