General information for g4373.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4373 is located on chr_2: 1711498..1715094 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4373 | g4373.t2 | TTS | g4373.t2 | 1708811 | 1708811 |
| chr_2 | g4373 | g4373.t2 | isoform | g4373.t2 | 1709576 | 1710987 |
| chr_2 | g4373 | g4373.t2 | exon | g4373.t2.exon1 | 1709576 | 1709893 |
| chr_2 | g4373 | g4373.t2 | cds | g4373.t2.CDS1 | 1709576 | 1709893 |
| chr_2 | g4373 | g4373.t2 | exon | g4373.t2.exon2 | 1710454 | 1710651 |
| chr_2 | g4373 | g4373.t2 | cds | g4373.t2.CDS2 | 1710454 | 1710651 |
| chr_2 | g4373 | g4373.t2 | exon | g4373.t2.exon3 | 1710710 | 1710987 |
| chr_2 | g4373 | g4373.t2 | cds | g4373.t2.CDS3 | 1710710 | 1710799 |
| chr_2 | g4373 | g4373.t2 | TSS | g4373.t2 | NA | NA |
Sequences
>g4373.t2 Gene=g4373 Length=794
GGTAACAATTTTTTGTGCTCATTATTAACTTTTTAGAAAAAAAAATTATTTTCGATATCA
ATTACTGTCATTAATCAATTTTTTATACGTAATCATTTGCTTCTTTACAGGATTTGTCAC
AAATAAAATTATCAAAATTGAGTTGTGACGATTTGACAAATTTGCTTAGTCAAGTTAGTG
AATTAAAAATGGCAATTGAAAGTTTAGGACCATTATTGAAAGAAAATGCGATAACAGGAA
GAGTTCTTATGTATTGTGATTTGAATGAATTAAAATCGGTCCTCAAATTAAATTTTGGAC
ATTGGGAAATTTTTAAAATGCTTGTTTTGAGTCTTCGTGAAGGAGAAAATGCAACCAAGA
TTCCTGTTGTTACATTTAAAAATGATCAAAAGGACATGAATGATGGACCATCAACAAGTA
TGCAACAAGTTCCAGTAATAAGTCGAATAAAACAAAAGAGTGTTATCGAAAAACAGGTAA
CTCTGGAGCAGGAAATGATTTGCGGTGCGTTATCAACTTTAAATGAGGATGCTTTCGAAG
ATGTAACCTTATCAAATCCTAATCCATCGTCGTCATCAAATGGATCTACAGGTGAGCTTA
TTCTTCAGCAAAATTATCTGGCACCAATAACTGAAGAGTTTGGCTCTCCAACTCCATCGC
GGAGTTTTGATAGCTTCTTTGATGATGCTAATCAGTTTGAAGTTGTTAATAACATTAATC
GCAATAACAATAATGAATCAACAGTCATCATTATGCCTAATTTTCCAACAAATATTGATG
ACACACGCTTATAA
>g4373.t2 Gene=g4373 Length=201
MAIESLGPLLKENAITGRVLMYCDLNELKSVLKLNFGHWEIFKMLVLSLREGENATKIPV
VTFKNDQKDMNDGPSTSMQQVPVISRIKQKSVIEKQVTLEQEMICGALSTLNEDAFEDVT
LSNPNPSSSSNGSTGELILQQNYLAPITEEFGSPTPSRSFDSFFDDANQFEVVNNINRNN
NNESTVIIMPNFPTNIDDTRL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g4373.t2 | PANTHER | PTHR24123:SF50 | - | 19 | 135 | 0.00e+00 |
| g4373.t2 | PANTHER | PTHR24123 | ANKYRIN REPEAT-CONTAINING | 19 | 135 | 0.00e+00 |
| g4373.t2 | SUPERFAMILY | SSF47769 | SAM/Pointed domain | 7 | 51 | 1.47e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
