General information for g4373.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Kinase D-interacting substrate of 220 kDa.
Parent gene
- The parent gene g4373 is located on chr_2: 1711498..1715094 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4373 | g4373.t4 | isoform | g4373.t4 | 1711498 | 1712362 |
| chr_2 | g4373 | g4373.t4 | exon | g4373.t4.exon1 | 1711498 | 1712362 |
| chr_2 | g4373 | g4373.t4 | cds | g4373.t4.CDS1 | 1711571 | 1712242 |
| chr_2 | g4373 | g4373.t4 | TSS | g4373.t4 | NA | NA |
| chr_2 | g4373 | g4373.t4 | TTS | g4373.t4 | NA | NA |
Sequences
>g4373.t4 Gene=g4373 Length=865
GTTCGATGTCTTGATTCTTTTACTGGTCAACAAAGTCGTCTCGTTGGTGTCGTTGATACA
CTAGACTCATGCGACACAGAACGAACATTGAGTATATTGAATGGAATTCAAACGTTGTTG
ATGACACCACCTAATCGACCATTTGTTTTGTTACTCGCAGTTGACCCACATGTGGTTGCA
AAAGCAGCTGAAAACAATAGTAAAAGATTGTTCACAGAGGGTGGTATAGGTGGTCATGAT
TTCCTGAGAAATCTCGTACATCTGCCTGTTTATCTACAAAATTCAGGCCTGCGAAAAGTT
CAGCGTGCACAGACAACTGCTATGCAGTATAAACGTGTGCTTTCAGACACATATGATGAT
GTTGGAATATCATATTCGGCTTCACATCGACGACTATCGAATGCATCAGAAATTATGGCT
AGTACAGAAAAATTGAGAGGAATTTCAAGAGGTTCCAAAAAATTGAAACTTTCAGAGTCA
ATTGCGAGCTCAATTGGATCAAATATCCACAAGCTTGGCGGTAATCAATTCGAATTTTCT
AAAGTTATGCTCACCGATGATTATTTCAGCGATGTAAACCCAAGAAGCATGCGACGCCTT
ATGAATGTCATTTATATTACTGTGCGATTACTAAAAGCATTTCAAATTGACTTTAGTTGG
TATAGATTGGGTTCTTGGATAAATTTAACGGAGCAATGGCCACTTCGTGCTAGTATGATT
GTACTTGAGCATGATCAGAGTGGAGAAAATTTAGATGAAACAATCTCACTGCAGTCATTG
TACGAGAAGTAAGTGGATGAAATATGGAAAAGTTCATTGATTCGATAATTTATTGATTTA
TCCTTCTTTCTTATAGAGTTAGACC
>g4373.t4 Gene=g4373 Length=223
MTPPNRPFVLLLAVDPHVVAKAAENNSKRLFTEGGIGGHDFLRNLVHLPVYLQNSGLRKV
QRAQTTAMQYKRVLSDTYDDVGISYSASHRRLSNASEIMASTEKLRGISRGSKKLKLSES
IASSIGSNIHKLGGNQFEFSKVMLTDDYFSDVNPRSMRRLMNVIYITVRLLKAFQIDFSW
YRLGSWINLTEQWPLRASMIVLEHDQSGENLDETISLQSLYEK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g4373.t4 | PANTHER | PTHR24123:SF50 | - | 9 | 223 | 6.2E-79 |
| 3 | g4373.t4 | PANTHER | PTHR24123 | ANKYRIN REPEAT-CONTAINING | 9 | 223 | 6.2E-79 |
| 1 | g4373.t4 | Pfam | PF07693 | KAP family P-loop domain | 6 | 171 | 4.9E-34 |
| 6 | g4373.t4 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 22 | - |
| 7 | g4373.t4 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 6 | - |
| 8 | g4373.t4 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 7 | 14 | - |
| 9 | g4373.t4 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 15 | 22 | - |
| 5 | g4373.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 23 | 223 | - |
| 4 | g4373.t4 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 22 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
