Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative GMP synthase [glutamine-hydrolyzing].

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4397 g4397.t7 isoform g4397.t7 1964981 1967482
chr_2 g4397 g4397.t7 exon g4397.t7.exon1 1964981 1965077
chr_2 g4397 g4397.t7 cds g4397.t7.CDS1 1964982 1965077
chr_2 g4397 g4397.t7 exon g4397.t7.exon2 1965131 1965431
chr_2 g4397 g4397.t7 cds g4397.t7.CDS2 1965131 1965431
chr_2 g4397 g4397.t7 exon g4397.t7.exon3 1965661 1965778
chr_2 g4397 g4397.t7 cds g4397.t7.CDS3 1965661 1965758
chr_2 g4397 g4397.t7 exon g4397.t7.exon4 1965838 1966108
chr_2 g4397 g4397.t7 exon g4397.t7.exon5 1967470 1967482
chr_2 g4397 g4397.t7 TSS g4397.t7 1967532 1967532
chr_2 g4397 g4397.t7 TTS g4397.t7 NA NA

Sequences

>g4397.t7 Gene=g4397 Length=800
TATTTTGAAAAGGATGCTGGAGCTCAATTTGGAAAGGTAACAAACTAATATATTCATGTC
TTTCAATTGAATAAAAACAAAATGTTTTAAATTTTAGGTCATTGATAGAAAAGTTAGGGA
ATTGCAAGTTGAATCAGAGATTTTGCCTCTTGCGACAACAGCTCAATATATCAAAGACCA
AGGGTTTAAAGCTATCATAATTTCTGGTGGACCGGCATCAGTGTATCATTCTGATGCACC
AAAATATGATCCTGATATTTTTAAGCTAGGACTGCCTGTGTTAGGAATTTGTTATGGTCT
TCAAATGATAAATAAAGAGTTTGGAGGAACTGTAATTAGATCAGATGTTCGTGAAGATGG
ACAATTGGTTATTCAAGTTGATCCATCTTGTCCTCTTTTTCACGGTCTTCAATCATCACA
GACGGTGCTTCTTACTCATGGTGATGTAGTCGACAAAGTTTGCGATAAATTTAAAGTAAG
TGCAAGAAGCTCTTCTGATATGATTGCTGGAGTGTACAATGAGCAAGCACGTATATACGG
AATCCAATTTCATCCTGAAGTCGATTTAACACTGCAAGGAAAAAAGATTCTTAGTAATTT
TCTTTTCGAAATAGCAAGAATTGCACCTAGTTTCACAATGAGTTGTCGAAAAGAAGAGTG
CATTAAATACATTCGTGAGAAAGTAGGAAATAGTAAAGTTTTGCTTCTATGTAGTGGAGG
TGTTGATTCTACTGTATGTGCAGCATTATTAAGAGTAGCACTACAACCAAATCAAATTTT
GGCTTTACATATTGATAATG

>g4397.t7 Gene=g4397 Length=165
MINKEFGGTVIRSDVREDGQLVIQVDPSCPLFHGLQSSQTVLLTHGDVVDKVCDKFKVSA
RSSSDMIAGVYNEQARIYGIQFHPEVDLTLQGKKILSNFLFEIARIAPSFTMSCRKEECI
KYIREKVGNSKVLLLCSGGVDSTVCAALLRVALQPNQILALHIDN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g4397.t7 Gene3D G3DSA:3.40.50.880 - 1 110 0.000000
8 g4397.t7 Gene3D G3DSA:3.40.50.620 HUPs 111 165 0.000000
3 g4397.t7 PANTHER PTHR11922:SF2 GMP SYNTHASE [GLUTAMINE-HYDROLYZING] 1 165 0.000000
4 g4397.t7 PANTHER PTHR11922 GMP SYNTHASE-RELATED 1 165 0.000000
1 g4397.t7 Pfam PF00117 Glutamine amidotransferase class-I 2 102 0.000000
2 g4397.t7 Pfam PF02540 NAD synthase 120 162 0.000064
10 g4397.t7 ProSiteProfiles PS51273 Glutamine amidotransferase type 1 domain profile. 1 109 16.592000
9 g4397.t7 ProSiteProfiles PS51553 GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile. 110 165 22.684000
6 g4397.t7 SUPERFAMILY SSF52317 Class I glutamine amidotransferase-like 1 107 0.000000
5 g4397.t7 SUPERFAMILY SSF52402 Adenine nucleotide alpha hydrolases-like 95 165 0.000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016462 pyrophosphatase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed