Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Putative cysteine proteinase CG12163.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4405 g4405.t28 TTS g4405.t28 2001061 2001061
chr_2 g4405 g4405.t28 isoform g4405.t28 2002073 2003271
chr_2 g4405 g4405.t28 exon g4405.t28.exon1 2002073 2003089
chr_2 g4405 g4405.t28 cds g4405.t28.CDS1 2002075 2003046
chr_2 g4405 g4405.t28 exon g4405.t28.exon2 2003160 2003271
chr_2 g4405 g4405.t28 TSS g4405.t28 NA NA

Sequences

>g4405.t28 Gene=g4405 Length=1129
GTCAAATCGGTGTTCCCGGTGGAATCAGTCCTGTAGAAAACTTTGAAGATGTAAAAATTT
ATGTTCAAGAAGCTATTGATGAAATTAATGATAATGAAGATCCTGATTACATTTTGAAAC
ATATCGTTGAAGCAACCCAACAAGTTGTTGCAGGCATGAGTTATAAAATTAAAGCAGTGT
TTTCCAGAGATGGAAGCGACATTGAATGTGATTTTGATGTATGGGAGCAAGCTTGGATTA
AAGATGGACGTAAAGTTTCAGTTTCTTGCAAAAATGATAAGAAATATAAGTTGACCCAAT
CACCATCTAATCAGCGTGTCAAACGTGATAACACGCTTGAAAGAGTTCTTGGTTTACCAT
CCAATACTGATGATCATGACGATTTGATAAAAATACTTTCTGAACATTTGAAGAGACTCG
ATACTGGAAGTGATGCACAATTTGAATTGGTAAAACTTGAAAAGGTAACTCAACAAGTAG
TAGCTGGAATAAAATATAAAGCAACAGGTATTTTTAAAATTGGCAATGAAGAGAAAAAAT
GTGTTATCGATGTATGGCATCGCTCATGGATTAAGGGAGATGAAGGCACTCAATTAAGCG
CTGATTGTGATAAAGGTGCAACAACTTTCAAGACAAAATCTTCTAGAAAAAGGAGATCAG
TTCATCACCACACACACAATCGTCACAATAGACAATCAGTAAGCGATCATTTTGATGACC
ATCATCATCATACTGATAGACATCATCATCAATACTCAGCTACTGAAGAAATGAAAGAAA
TAAAATCTGAAATTTTATTTAACAATTTCATAACTAAATATAATCGTAAATATGCCAATG
AACTTGAACATAAAATGAGAATGAGAATTTTCAAGAAGAATTTACATAAAATTGAAATGT
TGAATAAGCATGAACAAGGCACTGCAAAGTATGGAATTACAGAATTCGCTGATTTAACTG
AAAAGGAATACTTGCATAAAACTGGTTTGAGAGTGCGTGAAAGACATGAGAATGAATTAG
AAAATCCAATTGCACATATTCCAGAAGTTGAAGATTTACCAACCGAATTTGATTGGAGAG
ATAAATCAGCAGTTACAAGTGTAAAAAATCAAGGAAATTGTGGATCATG

>g4405.t28 Gene=g4405 Length=324
MSYKIKAVFSRDGSDIECDFDVWEQAWIKDGRKVSVSCKNDKKYKLTQSPSNQRVKRDNT
LERVLGLPSNTDDHDDLIKILSEHLKRLDTGSDAQFELVKLEKVTQQVVAGIKYKATGIF
KIGNEEKKCVIDVWHRSWIKGDEGTQLSADCDKGATTFKTKSSRKRRSVHHHTHNRHNRQ
SVSDHFDDHHHHTDRHHHQYSATEEMKEIKSEILFNNFITKYNRKYANELEHKMRMRIFK
KNLHKIEMLNKHEQGTAKYGITEFADLTEKEYLHKTGLRVRERHENELENPIAHIPEVED
LPTEFDWRDKSAVTSVKNQGNCGS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g4405.t28 Gene3D G3DSA:3.10.450.10 - 60 150 3.2E-11
12 g4405.t28 Gene3D G3DSA:3.90.70.10 Cysteine proteinases 194 324 3.8E-29
9 g4405.t28 MobiDBLite mobidb-lite consensus disorder prediction 157 203 -
10 g4405.t28 MobiDBLite mobidb-lite consensus disorder prediction 160 178 -
8 g4405.t28 MobiDBLite mobidb-lite consensus disorder prediction 179 203 -
3 g4405.t28 PANTHER PTHR13814:SF16 CYSTATIN 214 324 1.4E-33
4 g4405.t28 PANTHER PTHR13814 FETUIN 214 324 1.4E-33
1 g4405.t28 Pfam PF08246 Cathepsin propeptide inhibitor domain (I29) 215 272 1.4E-12
2 g4405.t28 Pfam PF00112 Papain family cysteine protease 301 324 6.6E-5
7 g4405.t28 SMART SM00848 Inhibitor_I29_2 215 272 3.0E-18
5 g4405.t28 SUPERFAMILY SSF54403 Cystatin/monellin 73 140 2.07E-8
6 g4405.t28 SUPERFAMILY SSF54001 Cysteine proteinases 212 324 1.05E-28

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008234 cysteine-type peptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed