General information for g4405.t32
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4405 is located on chr_2: 2005157..2008641 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4405 | g4405.t32 | isoform | g4405.t32 | 2002667 | 2005157 |
| chr_2 | g4405 | g4405.t32 | exon | g4405.t32.exon1 | 2002667 | 2003089 |
| chr_2 | g4405 | g4405.t32 | cds | g4405.t32.CDS1 | 2002669 | 2003046 |
| chr_2 | g4405 | g4405.t32 | exon | g4405.t32.exon2 | 2003160 | 2003281 |
| chr_2 | g4405 | g4405.t32 | TTS | g4405.t32 | 2004850 | 2004850 |
| chr_2 | g4405 | g4405.t32 | exon | g4405.t32.exon3 | 2004970 | 2005157 |
| chr_2 | g4405 | g4405.t32 | TSS | g4405.t32 | 2005223 | 2005223 |
Sequences
>g4405.t32 Gene=g4405 Length=733
ATGTGGAAATTTAAAATTTTGCTAATTTGTTTAGCAAGTATTATAATAGTTAATGCCACA
GAATGTGAAGATTGTCAAAATGTAAGTAGTTTTAGTGCATTTCCAAATAATTTCTAAAGT
CGCAATTAAATCCTCTAGAAGAAAAAAAAGTATTGATTAAAAAAAGAAAATGTTTTAATG
AATATTTGCGTGCTGCTCGTCAAATCGGTGTTCCCGGTGGAATCAGTCCTGTAGAAAACT
TTGAAGATGTAAAAATTTATGTTCAAGAAGCTATTGATGAAATTAATGATAATGAAGATC
CTGATTACATTTTGAAACATATCGTTGAAGCAACCCAACAAGTTGTTGCAGGCATGAGTT
ATAAAATTAAAGCAGTGTTTTCCAGAGATGGAAGCGACATTGAATGTGATTTTGATGTAT
GGGAGCAAGCTTGGATTAAAGATGGACGTAAAGTTTCAGTTTCTTGCAAAAATGATAAGA
AATATAAGTTGACCCAATCACCATCTAATCAGCGTGTCAAACGTGATAACACGCTTGAAA
GAGTTCTTGGTTTACCATCCAATACTGATGATCATGACGATTTGATAAAAATACTTTCTG
AACATTTGAAGAGACTCGATACTGGAAGTGATGCACAATTTGAATTGGTAAAACTTGAAA
AGGTAACTCAACAAGTAGTAGCTGGAATAAAATATAAAGCAACAGGTATTTTTAAAATTG
GCAATGAAGAGAA
>g4405.t32 Gene=g4405 Length=126
MSYKIKAVFSRDGSDIECDFDVWEQAWIKDGRKVSVSCKNDKKYKLTQSPSNQRVKRDNT
LERVLGLPSNTDDHDDLIKILSEHLKRLDTGSDAQFELVKLEKVTQQVVAGIKYKATGIF
KIGNEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g4405.t32 | Gene3D | G3DSA:3.10.450.10 | - | 64 | 124 | 3.5e-06 |
| 1 | g4405.t32 | Pfam | PF00031 | Cystatin domain | 66 | 115 | 3.7e-05 |
| 2 | g4405.t32 | SUPERFAMILY | SSF54403 | Cystatin/monellin | 73 | 117 | 6.0e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004869 | cysteine-type endopeptidase inhibitor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed