General information for g4417.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as F-actin-capping protein subunit beta.
Parent gene
- The parent gene g4417 is located on chr_2: 2050394..2052503 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4417 | g4417.t11 | TTS | g4417.t11 | 2048676 | 2048676 |
| chr_2 | g4417 | g4417.t11 | isoform | g4417.t11 | 2049523 | 2050026 |
| chr_2 | g4417 | g4417.t11 | exon | g4417.t11.exon1 | 2049523 | 2050026 |
| chr_2 | g4417 | g4417.t11 | cds | g4417.t11.CDS1 | 2049523 | 2049843 |
| chr_2 | g4417 | g4417.t11 | TSS | g4417.t11 | 2050554 | 2050554 |
Sequences
>g4417.t11 Gene=g4417 Length=504
GATTTAATTGATTTAGCACCCGCATTATGCGAGGATTTGCTCACATCTGTGGATCAGCCA
TTAAAAATTGCCAAGGATAAAGAAACAGGAAAAGACTATTTATTATGTGATTATAATCGA
GATGGTGACTCATATCGATCGCCTTGGTCAAATACTTATGATCCGCCTCTTGAAGATGGC
TCAATGCCTTCAGAGCGACTGAGAAAATTAGAAATTGAAGCCAATCATGCGTTCGACCAA
TATCGTGAAATGTATTATGAAGGTGGTGTGTCGTCTGCTTATCTTTGGGATTTAGATCAC
GGTTTTGCTGGTGTGATTTTAATTAAAAAAGCTGGAGATGGAAATAAAAAAATCAAAGGT
TGTTGGGACTCAATTCATGTTGTTGAAGTTCAAGAAAAGAGTTCAGGAAGAACAGCACAT
TATAAACTAACATCGACTGCAATGTTATGGCTTCAAACACATAAACAAGCGTCGGGAACG
ATGAATTTAGGCGGAAGTTTAACA
>g4417.t11 Gene=g4417 Length=107
MPSERLRKLEIEANHAFDQYREMYYEGGVSSAYLWDLDHGFAGVILIKKAGDGNKKIKGC
WDSIHVVEVQEKSSGRTAHYKLTSTAMLWLQTHKQASGTMNLGGSLT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g4417.t11 | Gene3D | G3DSA:2.40.160.80 | - | 3 | 107 | 0 |
| 2 | g4417.t11 | PANTHER | PTHR10619 | F-ACTIN-CAPPING PROTEIN SUBUNIT BETA | 1 | 107 | 0 |
| 1 | g4417.t11 | Pfam | PF01115 | F-actin capping protein, beta subunit | 1 | 107 | 0 |
| 3 | g4417.t11 | SUPERFAMILY | SSF90096 | Subunits of heterodimeric actin filament capping protein Capz | 2 | 107 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051016 | barbed-end actin filament capping | BP |
| GO:0008290 | F-actin capping protein complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
