Gene loci information

Transcript annotation

  • This transcript has been annotated as Ethanolamine-phosphate cytidylyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4432 g4432.t11 isoform g4432.t11 2133003 2136213
chr_2 g4432 g4432.t11 exon g4432.t11.exon1 2133003 2133694
chr_2 g4432 g4432.t11 TTS g4432.t11 2133011 2133011
chr_2 g4432 g4432.t11 cds g4432.t11.CDS1 2133380 2133694
chr_2 g4432 g4432.t11 exon g4432.t11.exon2 2133750 2134063
chr_2 g4432 g4432.t11 cds g4432.t11.CDS2 2133750 2134063
chr_2 g4432 g4432.t11 exon g4432.t11.exon3 2134385 2134497
chr_2 g4432 g4432.t11 cds g4432.t11.CDS3 2134385 2134497
chr_2 g4432 g4432.t11 exon g4432.t11.exon4 2134557 2134623
chr_2 g4432 g4432.t11 cds g4432.t11.CDS4 2134557 2134623
chr_2 g4432 g4432.t11 exon g4432.t11.exon5 2134773 2134885
chr_2 g4432 g4432.t11 cds g4432.t11.CDS5 2134773 2134885
chr_2 g4432 g4432.t11 exon g4432.t11.exon6 2135274 2135391
chr_2 g4432 g4432.t11 cds g4432.t11.CDS6 2135274 2135308
chr_2 g4432 g4432.t11 exon g4432.t11.exon7 2136161 2136213
chr_2 g4432 g4432.t11 TSS g4432.t11 2136415 2136415

Sequences

>g4432.t11 Gene=g4432 Length=1470
ATGTCTGATTCAACTAATCAAAAGAAGGAAGTTAGGGTTTGGATTGATGGATGTTATGAT
ATGGTGCATTTTGGACATGCTAATGCTTTACGTCAAGCAAAAGCCCTTGGAGATAAATTG
ATAGTCGGCATTCATAATGATGCAGAAATCACAAAACATAAAGGCCCGCCAATATAAAAT
GATCAAGGGCATCAAATGGGTTGATGAAGTTGTTGAAGATGCACCATATGTAACAACTTT
GGAAACGTTAAATAATTATAACTGCGACTTTTGTGTACATGGTGATGATATTACAACAAC
TGTTGATGGATTTGATACTTATCATCTTGTAAAAGAGGCAAAGCGTTATAAAGAAATTTC
CCGAACACAAGGTGTCTCTACTACTGATTTGGTTGGACGAATGCTTTTAATGACTCGCAA
TCATTTCCAGAAAGGTGACTCAGAATATAGTGTTGGAAAAGATGAACCTTCAAAATTGGG
ACAAGATCATGCTGCACGTTCGCCTTGGACAGGTTGTTCACAATTCCTTCCAACAACTCA
GAAGATTAATCAATTCTCAGATGGAAAGCCCCCAGAACCAGGTGATAAGATTGTTTATGT
AGCAGGTGCTTTCGATTTGTTCCATATAGGCCACTTAGACTTTTTGGAGAAAGCTAAATC
ATTTGGCGATTTTCTAATTGTTGGACTTCATACTGATAATGTAGTAAATCAATATAAAGG
TGGAAATTATCCAATTATGAATCTTCATGAGAGAGTATTGAGTGTTCTTGCTTGCAAGTA
TGTAAATGAAGTTGTTATTGGAGCACCATACGAAGTAACCAAAGACTTGATGGAACATTT
CAAAGTTGATGTTGTGTGTCATGGAAAAACTAAAATTTCAGACCAACACGGTGATCCATA
TGAAGTTCCAAAGCAAATGGGCAAATTTAAAGTTGTTGATTCCGGTAATGAAATGACAAC
CGAAAAAATTGTCCAAAGAATTATTCAAAATCGTCTAGAGTTTGAGAAACGCAACAATAA
GAAAGAGGCCAAAGAAGTTGCTATTTTTGAAGCAATGCAACGTACAACAAAAGTCGCAGA
AAAGTGCGGATAAACACTAATCATGACATTTATTCATTTATTTTTTAAAGATATTTTTGA
CCTAAATTATGTATGGTTTTTAAAAGAATCTGCTTGTTGCTATAATAGCATTGTGTTATT
AATTTATTTTCTTTTGTTTATCATGTTTTTTTTTAAAGAAGCAATGATGCTTAATTTACA
TCAAAATATACAATTTATTTATCTGTTAATATGTACCTATCAAGTTATTTTTCTTTCTAT
GAAAAAACATGATTTTGTTAAAAAAAAATACTTAATTCTTAAATATAAACGTGAGAGCTT
GTAGCTTACGAAGAAACTGTAAATGTATTTATTACAAGACATATATTATATATCCCAATA
AAATATTAAGCTTACAAATGATAATTTTCT

>g4432.t11 Gene=g4432 Length=318
MMQKSQNIKARQYKMIKGIKWVDEVVEDAPYVTTLETLNNYNCDFCVHGDDITTTVDGFD
TYHLVKEAKRYKEISRTQGVSTTDLVGRMLLMTRNHFQKGDSEYSVGKDEPSKLGQDHAA
RSPWTGCSQFLPTTQKINQFSDGKPPEPGDKIVYVAGAFDLFHIGHLDFLEKAKSFGDFL
IVGLHTDNVVNQYKGGNYPIMNLHERVLSVLACKYVNEVVIGAPYEVTKDLMEHFKVDVV
CHGKTKISDQHGDPYEVPKQMGKFKVVDSGNEMTTEKIVQRIIQNRLEFEKRNNKKEAKE
VAIFEAMQRTTKVAEKCG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g4432.t11 CDD cd02173 ECT 149 297 0
8 g4432.t11 Gene3D G3DSA:3.40.50.620 HUPs 6 123 0
7 g4432.t11 Gene3D G3DSA:3.40.50.620 HUPs 124 289 0
3 g4432.t11 PANTHER PTHR45780:SF2 ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE 12 310 0
4 g4432.t11 PANTHER PTHR45780 ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE 12 310 0
1 g4432.t11 Pfam PF01467 Cytidylyltransferase-like 12 86 0
2 g4432.t11 Pfam PF01467 Cytidylyltransferase-like 155 267 0
6 g4432.t11 SUPERFAMILY SSF52374 Nucleotidylyl transferase 13 89 0
5 g4432.t11 SUPERFAMILY SSF52374 Nucleotidylyl transferase 151 282 0
9 g4432.t11 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 152 219 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009058 biosynthetic process BP
GO:0003824 catalytic activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values