Gene loci information

Transcript annotation

  • This transcript has been annotated as Ethanolamine-phosphate cytidylyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4432 g4432.t15 TTS g4432.t15 2133011 2133011
chr_2 g4432 g4432.t15 isoform g4432.t15 2133380 2136213
chr_2 g4432 g4432.t15 exon g4432.t15.exon1 2133380 2133694
chr_2 g4432 g4432.t15 cds g4432.t15.CDS1 2133380 2133694
chr_2 g4432 g4432.t15 exon g4432.t15.exon2 2133750 2134114
chr_2 g4432 g4432.t15 cds g4432.t15.CDS2 2133750 2134114
chr_2 g4432 g4432.t15 exon g4432.t15.exon3 2134385 2134497
chr_2 g4432 g4432.t15 cds g4432.t15.CDS3 2134385 2134497
chr_2 g4432 g4432.t15 exon g4432.t15.exon4 2134557 2134623
chr_2 g4432 g4432.t15 cds g4432.t15.CDS4 2134557 2134623
chr_2 g4432 g4432.t15 exon g4432.t15.exon5 2134776 2134885
chr_2 g4432 g4432.t15 cds g4432.t15.CDS5 2134776 2134885
chr_2 g4432 g4432.t15 exon g4432.t15.exon6 2135254 2135391
chr_2 g4432 g4432.t15 cds g4432.t15.CDS6 2135254 2135391
chr_2 g4432 g4432.t15 exon g4432.t15.exon7 2136161 2136213
chr_2 g4432 g4432.t15 cds g4432.t15.CDS7 2136161 2136213
chr_2 g4432 g4432.t15 TSS g4432.t15 2136415 2136415

Sequences

>g4432.t15 Gene=g4432 Length=1161
ATGTCTGATTCAACTAATCAAAAGAAGGAAGTTAGGGTTTGGATTGATGGATGTTATGAT
ATGGTGCATTTTGGACATGCTAATGCTTTACGTCAAGCAAAAGCCCTTGGAGATAAATTG
ATAGTCGGCATTCATAATGATGCAGAAATCACAAAACATAAAGGCCCGCCAGTATTTACA
CAAGAAGAAAGATATAAAATGATCAAGGGCATCAAATGGGTTGATGAAGTTGTTGAAGAT
GCACCATATGTAACAACTTTGGAAACGTTAAATAATTATAACTGCGACTTTTGTGTACAT
GATGATATTACAACAACTGTTGATGGATTTGATACTTATCATCTTGTAAAAGAGGCAAAG
CGTTATAAAGAAATTTCCCGAACACAAGGTGTCTCTACTACTGATTTGGTTGGACGAATG
CTTTTAATGACTCGCAATCATTTCCAGAAAGGTGACTCAGAATATAGTGTTGGAAAAGAT
GATGAAAATGAAAAAGCTTTCAATATGTTAATCAAGAAATTTGAAATTCAAGAACCTTCA
AAATTGGGACAAGATCATGCTGCACGTTCGCCTTGGACAGGTTGTTCACAATTCCTTCCA
ACAACTCAGAAGATTAATCAATTCTCAGATGGAAAGCCCCCAGAACCAGGTGATAAGATT
GTTTATGTAGCAGGTGCTTTCGATTTGTTCCATATAGGCCACTTAGACTTTTTGGAGAAA
GCTAAATCATTTGGCGATTTTCTAATTGTTGGACTTCATACTGATAATGTAGTAAATCAA
TATAAAGGTGGAAATTATCCAATTATGAATCTTCATGAGAGAGTATTGAGTGTTCTTGCT
TGCAAGTATGTAAATGAAGTTGTTATTGGAGCACCATACGAAGTAACCAAAGACTTGATG
GAACATTTCAAAGTTGATGTTGTGTGTCATGGAAAAACTAAAATTTCAGACCAACACGGT
GATCCATATGAAGTTCCAAAGCAAATGGGCAAATTTAAAGTTGTTGATTCCGGTAATGAA
ATGACAACCGAAAAAATTGTCCAAAGAATTATTCAAAATCGTCTAGAGTTTGAGAAACGC
AACAATAAGAAAGAGGCCAAAGAAGTTGCTATTTTTGAAGCAATGCAACGTACAACAAAA
GTCGCAGAAAAGTGCGGATAA

>g4432.t15 Gene=g4432 Length=386
MSDSTNQKKEVRVWIDGCYDMVHFGHANALRQAKALGDKLIVGIHNDAEITKHKGPPVFT
QEERYKMIKGIKWVDEVVEDAPYVTTLETLNNYNCDFCVHDDITTTVDGFDTYHLVKEAK
RYKEISRTQGVSTTDLVGRMLLMTRNHFQKGDSEYSVGKDDENEKAFNMLIKKFEIQEPS
KLGQDHAARSPWTGCSQFLPTTQKINQFSDGKPPEPGDKIVYVAGAFDLFHIGHLDFLEK
AKSFGDFLIVGLHTDNVVNQYKGGNYPIMNLHERVLSVLACKYVNEVVIGAPYEVTKDLM
EHFKVDVVCHGKTKISDQHGDPYEVPKQMGKFKVVDSGNEMTTEKIVQRIIQNRLEFEKR
NNKKEAKEVAIFEAMQRTTKVAEKCG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g4432.t15 CDD cd02174 CCT 9 154 0
12 g4432.t15 CDD cd02173 ECT 217 365 0
8 g4432.t15 Gene3D G3DSA:3.40.50.620 HUPs 1 181 0
7 g4432.t15 Gene3D G3DSA:3.40.50.620 HUPs 192 357 0
3 g4432.t15 PANTHER PTHR45780:SF2 ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE 5 378 0
4 g4432.t15 PANTHER PTHR45780 ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE 5 378 0
1 g4432.t15 Pfam PF01467 Cytidylyltransferase-like 15 137 0
2 g4432.t15 Pfam PF01467 Cytidylyltransferase-like 223 332 0
6 g4432.t15 SUPERFAMILY SSF52374 Nucleotidylyl transferase 11 140 0
5 g4432.t15 SUPERFAMILY SSF52374 Nucleotidylyl transferase 219 350 0
10 g4432.t15 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 12 77 0
9 g4432.t15 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 220 287 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009058 biosynthetic process BP
GO:0003824 catalytic activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values