Gene loci information

Transcript annotation

  • This transcript has been annotated as Ethanolamine-phosphate cytidylyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4432 g4432.t16 TTS g4432.t16 2133011 2133011
chr_2 g4432 g4432.t16 isoform g4432.t16 2133786 2136213
chr_2 g4432 g4432.t16 exon g4432.t16.exon1 2133786 2134063
chr_2 g4432 g4432.t16 cds g4432.t16.CDS1 2133786 2134063
chr_2 g4432 g4432.t16 exon g4432.t16.exon2 2134385 2134497
chr_2 g4432 g4432.t16 cds g4432.t16.CDS2 2134385 2134497
chr_2 g4432 g4432.t16 exon g4432.t16.exon3 2134557 2134623
chr_2 g4432 g4432.t16 cds g4432.t16.CDS3 2134557 2134623
chr_2 g4432 g4432.t16 exon g4432.t16.exon4 2134773 2134885
chr_2 g4432 g4432.t16 cds g4432.t16.CDS4 2134773 2134885
chr_2 g4432 g4432.t16 exon g4432.t16.exon5 2135254 2135391
chr_2 g4432 g4432.t16 cds g4432.t16.CDS5 2135254 2135391
chr_2 g4432 g4432.t16 exon g4432.t16.exon6 2136161 2136213
chr_2 g4432 g4432.t16 cds g4432.t16.CDS6 2136161 2136213
chr_2 g4432 g4432.t16 TSS g4432.t16 2136415 2136415

Sequences

>g4432.t16 Gene=g4432 Length=762
ATGTCTGATTCAACTAATCAAAAGAAGGAAGTTAGGGTTTGGATTGATGGATGTTATGAT
ATGGTGCATTTTGGACATGCTAATGCTTTACGTCAAGCAAAAGCCCTTGGAGATAAATTG
ATAGTCGGCATTCATAATGATGCAGAAATCACAAAACATAAAGGCCCGCCAGTATTTACA
CAAGAAGAAAGATATAAAATGATCAAGGGCATCAAATGGGTTGATGAAGTTGTTGAAGAT
GCACCATATGTAACAACTTTGGAAACGTTAAATAATTATAACTGCGACTTTTGTGTACAT
GGTGATGATATTACAACAACTGTTGATGGATTTGATACTTATCATCTTGTAAAAGAGGCA
AAGCGTTATAAAGAAATTTCCCGAACACAAGGTGTCTCTACTACTGATTTGGTTGGACGA
ATGCTTTTAATGACTCGCAATCATTTCCAGAAAGGTGACTCAGAATATAGTGTTGGAAAA
GATGAACCTTCAAAATTGGGACAAGATCATGCTGCACGTTCGCCTTGGACAGGTTGTTCA
CAATTCCTTCCAACAACTCAGAAGATTAATCAATTCTCAGATGGAAAGCCCCCAGAACCA
GGTGATAAGATTGTTTATGTAGCAGGTGCTTTCGATTTGTTCCATATAGGCCACTTAGAC
TTTTTGGAGAAAGCTAAATCATTTGGCGATTTTCTAATTGTTGGACTTCATACTGATAAT
GTAGTAAATCAATATAAAGGTGGAAATTATCCAATTATGAAT

>g4432.t16 Gene=g4432 Length=254
MSDSTNQKKEVRVWIDGCYDMVHFGHANALRQAKALGDKLIVGIHNDAEITKHKGPPVFT
QEERYKMIKGIKWVDEVVEDAPYVTTLETLNNYNCDFCVHGDDITTTVDGFDTYHLVKEA
KRYKEISRTQGVSTTDLVGRMLLMTRNHFQKGDSEYSVGKDEPSKLGQDHAARSPWTGCS
QFLPTTQKINQFSDGKPPEPGDKIVYVAGAFDLFHIGHLDFLEKAKSFGDFLIVGLHTDN
VVNQYKGGNYPIMN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g4432.t16 CDD cd02174 CCT 9 155 0e+00
8 g4432.t16 Gene3D G3DSA:3.40.50.620 HUPs 1 174 0e+00
7 g4432.t16 Gene3D G3DSA:3.40.50.620 HUPs 176 254 0e+00
3 g4432.t16 PANTHER PTHR45780:SF2 ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE 5 254 0e+00
4 g4432.t16 PANTHER PTHR45780 ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE 5 254 0e+00
2 g4432.t16 Pfam PF01467 Cytidylyltransferase-like 15 138 0e+00
1 g4432.t16 Pfam PF01467 Cytidylyltransferase-like 207 246 1e-07
6 g4432.t16 SUPERFAMILY SSF52374 Nucleotidylyl transferase 11 141 0e+00
5 g4432.t16 SUPERFAMILY SSF52374 Nucleotidylyl transferase 203 251 0e+00
9 g4432.t16 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 12 77 0e+00
10 g4432.t16 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 204 253 0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009058 biosynthetic process BP
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values