Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Ectonucleoside triphosphate diphosphohydrolase 5.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4433 g4433.t23 TSS g4433.t23 2138427 2138427
chr_2 g4433 g4433.t23 isoform g4433.t23 2138739 2139921
chr_2 g4433 g4433.t23 exon g4433.t23.exon1 2138739 2139540
chr_2 g4433 g4433.t23 cds g4433.t23.CDS1 2138988 2139540
chr_2 g4433 g4433.t23 exon g4433.t23.exon2 2139604 2139921
chr_2 g4433 g4433.t23 cds g4433.t23.CDS2 2139604 2139839
chr_2 g4433 g4433.t23 TTS g4433.t23 2140138 2140138

Sequences

>g4433.t23 Gene=g4433 Length=1120
TTATTTAGAGAATTGAAGCCCGGACTATCCTCTTTGACACCGGACAAAGGTGCAGAACAA
ATTACAAGATTACTAAAGGAGGCTAAAGATTTTATTCCTGCCGAATATAGAAGAAAAACT
CCTATCGCTTTAAAAGCTACTGCCGGCTTAAGATTATTAGGTGCAGCAAAATCTGAAGCA
ATTCTAGAAAAAATTCGTGAAGTTTTTGCACAATCTGGATTTTTAATCAACGATGATTCA
GTAGAGATTATGGATGGAACTGATGAAGGCATATTCTCATGGTTCACAGTCAATTATCTC
TCAAATCGACTGACATCACGTAACACTGCAGCTGCATTAGATTTAGGTGGAGGTTCTACA
CAAGTGACTTACGAATTAAACGAGAATTTGCCAAGCTATAAAGAATATATTCACACTGTG
CCTGTACTCAATTCTGAATTGAATGTTTTTACTAACTCCTATCTTGGTTTAGGTTTGATG
GCGTTACGTCATGCTGTAATTACTTATCAAAAGGCTGATAATCAAACATCATTTGCAAGT
GAATGTATTAATCCCATTATAAAGGATAAAGTTTGGACCTATCAAAATATCGACTACCTT
GTATCTGGAAAAGAAAATAAAAATCAAGCCTCAAATCCAGAAAACCCCGAAGTAAATTTT
GACCTTTGTGTAGAGTCAGTAAAGCGACAAGTAATGCCATTATTAAAACCAAAACCAATT
AAATTGCAAGAGCACGTGATTAATGCGTTTTCCTATTATTATGATCGTGCCATTGAAGTT
GGTTTGGTTGATCCATATTTAGGAGGTGAAAATACTGTTGCAGATTTCTCTAAAAAGGCT
CGTGAAGTCTGTGCAACAGCTAATGCTGATCAACCATTTATGTGCTTAGATTTGGTTTAC
ATATCAGTATTACTTCAAGATGGATTCGGTCTCAAACCACAAACAAATATAAAGGTATAC
TGTAATTGTTCATATTATTTAACATTCGTAGTAAATCTTATTATATTTATAGCTTTACAA
AAAAATAAGAGGACATGAAGTTTCGTGGGCTTTGGGCTGTTTCTTTCAAAATTATAATAT
CCTACAGCAAAAAATGAAACGAGTAGCTGGTGTGAATTAG

>g4433.t23 Gene=g4433 Length=262
MDGTDEGIFSWFTVNYLSNRLTSRNTAAALDLGGGSTQVTYELNENLPSYKEYIHTVPVL
NSELNVFTNSYLGLGLMALRHAVITYQKADNQTSFASECINPIIKDKVWTYQNIDYLVSG
KENKNQASNPENPEVNFDLCVESVKRQVMPLLKPKPIKLQEHVINAFSYYYDRAIEVGLV
DPYLGGENTVADFSKKAREVCATANADQPFMCLDLVYISVLLQDGFGLKPQTNIKVYCNC
SYYLTFVVNLIIFIALQKNKRT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g4433.t23 Gene3D G3DSA:3.30.420.150 Exopolyphosphatase. Domain 2 2 242 2.5E-33
2 g4433.t23 PANTHER PTHR11782:SF35 ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE 5 1 240 1.1E-46
3 g4433.t23 PANTHER PTHR11782 ADENOSINE/GUANOSINE DIPHOSPHATASE 1 240 1.1E-46
1 g4433.t23 Pfam PF01150 GDA1/CD39 (nucleoside phosphatase) family 1 235 5.5E-24
7 g4433.t23 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 240 -
8 g4433.t23 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 241 257 -
6 g4433.t23 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 258 262 -
4 g4433.t23 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 234 256 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values