Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4433 g4433.t24 TSS g4433.t24 2138427 2138427
chr_2 g4433 g4433.t24 isoform g4433.t24 2138905 2140409
chr_2 g4433 g4433.t24 exon g4433.t24.exon1 2138905 2139338
chr_2 g4433 g4433.t24 cds g4433.t24.CDS1 2138988 2139338
chr_2 g4433 g4433.t24 exon g4433.t24.exon2 2140291 2140409
chr_2 g4433 g4433.t24 cds g4433.t24.CDS2 2140291 2140320
chr_2 g4433 g4433.t24 TTS g4433.t24 NA NA

Sequences

>g4433.t24 Gene=g4433 Length=553
CAAAATCTGAAGCAATTCTAGAAAAAATTCGTGAAGTTTTTGCACAATCTGGATTTTTAA
TCAACGATGATTCAGTAGAGATTATGGATGGAACTGATGAAGGCATATTCTCATGGTTCA
CAGTCAATTATCTCTCAAATCGACTGACATCACGTAACACTGCAGCTGCATTAGATTTAG
GTGGAGGTTCTACACAAGTGACTTACGAATTAAACGAGAATTTGCCAAGCTATAAAGAAT
ATATTCACACTGTGCCTGTACTCAATTCTGAATTGAATGTTTTTACTAACTCCTATCTTG
GTTTAGGTTTGATGGCGTTACGTCATGCTGTAATTACTTATCAAAAGGCTGATAATCAAA
CATCATTTGCAAGTGAATGTATTAATCCCATTATAAAGGATAAAGTTTGGACCTATCAAA
ATATCGACTACCTTTTACCTGCTTCTCACTTGTTCTATTTTTAGCGCATTTTTAAAACAA
CAATGCTACTATATCTTCACTTTGTTCGGCAGGCTGGGTGAGGCGCGAGATCTCTAAAAC
TATAATAGCTAGC

>g4433.t24 Gene=g4433 Length=126
MDGTDEGIFSWFTVNYLSNRLTSRNTAAALDLGGGSTQVTYELNENLPSYKEYIHTVPVL
NSELNVFTNSYLGLGLMALRHAVITYQKADNQTSFASECINPIIKDKVWTYQNIDYLLPA
SHLFYF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g4433.t24 Gene3D G3DSA:3.30.420.150 Exopolyphosphatase. Domain 2 2 118 0
2 g4433.t24 PANTHER PTHR11782:SF83 NTPASE, ISOFORM F 1 113 0
3 g4433.t24 PANTHER PTHR11782 ADENOSINE/GUANOSINE DIPHOSPHATASE 1 113 0
1 g4433.t24 Pfam PF01150 GDA1/CD39 (nucleoside phosphatase) family 1 114 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed