General information for g4433.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4433 is located on chr_2: 2138905..2140409 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4433 | g4433.t6 | TSS | g4433.t6 | 2137054 | 2137054 |
| chr_2 | g4433 | g4433.t6 | isoform | g4433.t6 | 2137260 | 2139316 |
| chr_2 | g4433 | g4433.t6 | exon | g4433.t6.exon1 | 2137260 | 2137295 |
| chr_2 | g4433 | g4433.t6 | exon | g4433.t6.exon2 | 2137902 | 2138048 |
| chr_2 | g4433 | g4433.t6 | exon | g4433.t6.exon3 | 2138501 | 2138592 |
| chr_2 | g4433 | g4433.t6 | exon | g4433.t6.exon4 | 2138662 | 2139316 |
| chr_2 | g4433 | g4433.t6 | cds | g4433.t6.CDS1 | 2138988 | 2139314 |
| chr_2 | g4433 | g4433.t6 | TTS | g4433.t6 | 2140138 | 2140138 |
Sequences
>g4433.t6 Gene=g4433 Length=930
ATGCCGAGTAAGAACGATAATTTGAGAAAGCGCAAGCTCATTCAAGAGAATGGTGATAAA
CAGGGAATAAGAAGAAAGATTCATGAAAAGCACAATAATAAAGCAAATCAAAATGCAGGA
CTGGTTACTAGTTTCTTATGTTTGGTCGCTACTGTAACGATATTAATAATATTTTTCAGG
TAATGTTTATACTGATTCACTACATCCCATTGTCGATCAGATTGCTACACAGCTTGGCTA
TTCAGAAAAGCAATATGGTGCAATTATTGATGCTGGCTCAACTGGCAGTCGTGTGTTAGC
TTTTGAATTTCATAAAGCATATCTTGATGGACGACTTGTATTAGATAACGAATTATTTAG
AGAATTGAAGCCCGGACTATCCTCTTTGACACCGGACAAAGGTGCAGAACAAATTACAAG
ATTACTAAAGGAGGCTAAAGATTTTATTCCTGCCGAATATAGAAGAAAAACTCCTATCGC
TTTAAAAGCTACTGCCGGCTTAAGATTATTAGGTGCAGCAAAATCTGAAGCAATTCTAGA
AAAAATTCGTGAAGTTTTTGCACAATCTGGATTTTTAATCAACGATGATTCAGTAGAGAT
TATGGATGGAACTGATGAAGGCATATTCTCATGGTTCACAGTCAATTATCTCTCAAATCG
ACTGACATCACGTAACACTGCAGCTGCATTAGATTTAGGTGGAGGTTCTACACAAGTGAC
TTACGAATTAAACGAGAATTTGCCAAGCTATAAAGAATATATTCACACTGTGCCTGTACT
CAATTCTGAATTGAATGTTTTTACTAACTCCTATCTTGGTTTAGGTTTGATGGCGTTACG
TCATGCTGTAATTACTTATCAAAAGGCTGATAATCAAACATCATTTGCAAGTGAATGTAT
TAATCCCATTATAAAGGATAAAGTTTGGAC
>g4433.t6 Gene=g4433 Length=109
MDGTDEGIFSWFTVNYLSNRLTSRNTAAALDLGGGSTQVTYELNENLPSYKEYIHTVPVL
NSELNVFTNSYLGLGLMALRHAVITYQKADNQTSFASECINPIIKDKVW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g4433.t6 | Gene3D | G3DSA:3.30.420.150 | Exopolyphosphatase. Domain 2 | 2 | 106 | 0 |
| 2 | g4433.t6 | PANTHER | PTHR11782:SF83 | NTPASE, ISOFORM F | 1 | 104 | 0 |
| 3 | g4433.t6 | PANTHER | PTHR11782 | ADENOSINE/GUANOSINE DIPHOSPHATASE | 1 | 104 | 0 |
| 1 | g4433.t6 | Pfam | PF01150 | GDA1/CD39 (nucleoside phosphatase) family | 1 | 105 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
