Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative oxidoreductase GLYR1-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4451 g4451.t1 TSS g4451.t1 2442641 2442641
chr_2 g4451 g4451.t1 isoform g4451.t1 2442769 2445068
chr_2 g4451 g4451.t1 exon g4451.t1.exon1 2442769 2442809
chr_2 g4451 g4451.t1 cds g4451.t1.CDS1 2442769 2442809
chr_2 g4451 g4451.t1 exon g4451.t1.exon2 2443070 2443106
chr_2 g4451 g4451.t1 cds g4451.t1.CDS2 2443070 2443106
chr_2 g4451 g4451.t1 exon g4451.t1.exon3 2443166 2443248
chr_2 g4451 g4451.t1 cds g4451.t1.CDS3 2443166 2443248
chr_2 g4451 g4451.t1 exon g4451.t1.exon4 2443307 2443436
chr_2 g4451 g4451.t1 cds g4451.t1.CDS4 2443307 2443436
chr_2 g4451 g4451.t1 exon g4451.t1.exon5 2443498 2443695
chr_2 g4451 g4451.t1 cds g4451.t1.CDS5 2443498 2443695
chr_2 g4451 g4451.t1 exon g4451.t1.exon6 2443757 2444660
chr_2 g4451 g4451.t1 cds g4451.t1.CDS6 2443757 2444660
chr_2 g4451 g4451.t1 exon g4451.t1.exon7 2444717 2444806
chr_2 g4451 g4451.t1 cds g4451.t1.CDS7 2444717 2444806
chr_2 g4451 g4451.t1 exon g4451.t1.exon8 2444866 2445068
chr_2 g4451 g4451.t1 cds g4451.t1.CDS8 2444866 2445068
chr_2 g4451 g4451.t1 TTS g4451.t1 2445918 2445918

Sequences

>g4451.t1 Gene=g4451 Length=1686
ATGAATGATACAGTATCTTTACACATCGGTGATTTGGTCTGGGCCAAAATGAAAGGATAT
TGTGCTTGGCCAGGGAGAATCGTTGAAGCAAGTGATCATCTACAAAAATCTAGAAAAACC
GAAAAATCACAATGCGTTTATTTCTTCGGAACTCATAATTATGCTTGGATTGAAGACAAC
AATGTTTATCCATATCTCGATTATAAAGATCAAATGCTTAAACTTGGCAAGCCTAAAACG
ACATTTGATAGAGCAGTTAATGAAATTGAAGCATATATGAAAGATCCTACCGCATCTGAA
ACAATAATAACACCGGCAAGGAAAAAATCGCTACCCAAAGTAAGACAATCAATAACGTCA
GCAGATGAGAGCATTGTTAAAGAGGAAATTGCAGAAGATATAAACGATGTTGCAAGTGGA
GTTGAAGAAGATGAGATTGAAACGCCAAAGAAAGTTGTTGCAAAAGTTCCAGTCAAGAAG
AATTCGACACAGAAAAAGTCAAAAGTAATGAGTGCAAAGAAAAAAGCTGAAGTTGATAGC
GGTGACATAGAAATTCCACCACCAAAAAGAGCACGTGTATCAAGTTCAAATTTGCTTGCT
CGTAATCATTCTATCAATAATAACAATAATGATTCAATCAGCTCATCAGAAATGGTTTCA
CAAAAAGAATATTCCTCACCAGTGCCTCGTTCACGTGTTGCTCGTGCAGTCATTGATCGT
CCAGAGATCATTTATACTAAACCAGAGTACTCTGAATTGGATGTAAAAACTATTACAGAT
ACATTGAAATCAAAGAAAATAACTGCATCTACGAGTAAATTTGGTTTCATTGGTCTCGGC
ATTATGGGTAGTGGCATAGTCAAAAATCTTATCAACTCTGGACATGAAGTATATGTTTAT
AATCGAACTAAAGACAAAACACTAAAGTTTGAGGAAGCTGGTGCTACTGTTTTGATTACA
CCAAGTGATGTAGTCGAAAATTCTGATATAACGTTCTCGTGTGTATCCGATCCACAAGCA
CTGAGAGATACAATTTTTGGAACTTATGGCGTTAGCTCATTACAACCTGAATTAGCTCAA
GGAAAAGGATATGTTGAAATGACAACAATTGATGCTGACACATCGAGAGATATTGAAAGT
GCATTGACATCGATAGGCATGCAATATTTGGAAGCACAAATTCATGGTACAAAAGAGCAA
GCTGAAGAGGGAAAGCTTATTATTTTAGCAGCAGGTAGCAAACAAATTTTCGACTCCTGT
CAAACATGCTTTGAAGCTATGGGTAGAAATTCATTTTTTGTTGGTGAAACGGGAAATGCA
ACAAAAATGAATTTAGTTTTACAAGCTATTTCGGGTGTAACTATTGCTGGACTTGCAGAT
TCTCTAGCACTTGCAAAAAGATCAGGATTAAAAACGGAAAAAGTGATGGAAATTCTTTCA
AATACAAATTTAAAATCAGATTTGATAATGGACAAAGGATATGCAATGGTTGAAGGTCGA
TATCATCACGTCAATCTACCACTACAGCACTTGCAAAAAGATCTCCGTTTAGCCACAAAT
ATGGCAGATAGCCTCAATCATCCTTTATCATTAACAGCTATTGCAAATGAAGCATACAAG
AATTGTCGTCGCGTTGGATTAGGTGAAAGCGATGCAAGCGCTATACATTATCGTGCTCTT
AACTAA

>g4451.t1 Gene=g4451 Length=561
MNDTVSLHIGDLVWAKMKGYCAWPGRIVEASDHLQKSRKTEKSQCVYFFGTHNYAWIEDN
NVYPYLDYKDQMLKLGKPKTTFDRAVNEIEAYMKDPTASETIITPARKKSLPKVRQSITS
ADESIVKEEIAEDINDVASGVEEDEIETPKKVVAKVPVKKNSTQKKSKVMSAKKKAEVDS
GDIEIPPPKRARVSSSNLLARNHSINNNNNDSISSSEMVSQKEYSSPVPRSRVARAVIDR
PEIIYTKPEYSELDVKTITDTLKSKKITASTSKFGFIGLGIMGSGIVKNLINSGHEVYVY
NRTKDKTLKFEEAGATVLITPSDVVENSDITFSCVSDPQALRDTIFGTYGVSSLQPELAQ
GKGYVEMTTIDADTSRDIESALTSIGMQYLEAQIHGTKEQAEEGKLIILAAGSKQIFDSC
QTCFEAMGRNSFFVGETGNATKMNLVLQAISGVTIAGLADSLALAKRSGLKTEKVMEILS
NTNLKSDLIMDKGYAMVEGRYHHVNLPLQHLQKDLRLATNMADSLNHPLSLTAIANEAYK
NCRRVGLGESDASAIHYRALN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g4451.t1 Gene3D G3DSA:2.30.30.140 - 2 102 0.00
10 g4451.t1 Gene3D G3DSA:3.40.50.720 - 256 435 0.00
12 g4451.t1 Gene3D G3DSA:1.10.1040.10 - 438 558 0.00
4 g4451.t1 PANTHER PTHR43580 OXIDOREDUCTASE GLYR1-RELATED 267 559 0.00
5 g4451.t1 PANTHER PTHR43580:SF2 OXIDOREDUCTASE GLYR1-RELATED 267 559 0.00
1 g4451.t1 Pfam PF00855 PWWP domain 8 93 0.00
3 g4451.t1 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 273 435 0.00
2 g4451.t1 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 438 555 0.00
13 g4451.t1 ProSiteProfiles PS50812 PWWP domain profile. 9 68 15.59
9 g4451.t1 SMART SM00293 PWWP_4 7 66 0.00
6 g4451.t1 SUPERFAMILY SSF63748 Tudor/PWWP/MBT 3 99 0.00
7 g4451.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 273 436 0.00
8 g4451.t1 SUPERFAMILY SSF48179 6-phosphogluconate dehydrogenase C-terminal domain-like 437 556 0.00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0050661 NADP binding MF
GO:0051287 NAD binding MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values