General information for g4451.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Putative oxidoreductase GLYR1-like protein.
Parent gene
- The parent gene g4451 is located on chr_2: 2444865..2445921 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4451 | g4451.t3 | TSS | g4451.t3 | 2442641 | 2442641 |
| chr_2 | g4451 | g4451.t3 | isoform | g4451.t3 | 2442769 | 2444132 |
| chr_2 | g4451 | g4451.t3 | exon | g4451.t3.exon1 | 2442769 | 2442809 |
| chr_2 | g4451 | g4451.t3 | cds | g4451.t3.CDS1 | 2442769 | 2442809 |
| chr_2 | g4451 | g4451.t3 | exon | g4451.t3.exon2 | 2443070 | 2443106 |
| chr_2 | g4451 | g4451.t3 | cds | g4451.t3.CDS2 | 2443070 | 2443106 |
| chr_2 | g4451 | g4451.t3 | exon | g4451.t3.exon3 | 2443166 | 2443248 |
| chr_2 | g4451 | g4451.t3 | cds | g4451.t3.CDS3 | 2443166 | 2443248 |
| chr_2 | g4451 | g4451.t3 | exon | g4451.t3.exon4 | 2443307 | 2443436 |
| chr_2 | g4451 | g4451.t3 | cds | g4451.t3.CDS4 | 2443307 | 2443436 |
| chr_2 | g4451 | g4451.t3 | exon | g4451.t3.exon5 | 2443498 | 2443695 |
| chr_2 | g4451 | g4451.t3 | cds | g4451.t3.CDS5 | 2443498 | 2443695 |
| chr_2 | g4451 | g4451.t3 | exon | g4451.t3.exon6 | 2443757 | 2444132 |
| chr_2 | g4451 | g4451.t3 | cds | g4451.t3.CDS6 | 2443757 | 2444131 |
| chr_2 | g4451 | g4451.t3 | TTS | g4451.t3 | NA | NA |
Sequences
>g4451.t3 Gene=g4451 Length=865
ATGAATGATACAGTATCTTTACACATCGGTGATTTGGTCTGGGCCAAAATGAAAGGATAT
TGTGCTTGGCCAGGGAGAATCGTTGAAGCAAGTGATCATCTACAAAAATCTAGAAAAACC
GAAAAATCACAATGCGTTTATTTCTTCGGAACTCATAATTATGCTTGGATTGAAGACAAC
AATGTTTATCCATATCTCGATTATAAAGATCAAATGCTTAAACTTGGCAAGCCTAAAACG
ACATTTGATAGAGCAGTTAATGAAATTGAAGCATATATGAAAGATCCTACCGCATCTGAA
ACAATAATAACACCGGCAAGGAAAAAATCGCTACCCAAAGTAAGACAATCAATAACGTCA
GCAGATGAGAGCATTGTTAAAGAGGAAATTGCAGAAGATATAAACGATGTTGCAAGTGGA
GTTGAAGAAGATGAGATTGAAACGCCAAAGAAAGTTGTTGCAAAAGTTCCAGTCAAGAAG
AATTCGACACAGAAAAAGTCAAAAGTAATGAGTGCAAAGAAAAAAGCTGAAGTTGATAGC
GGTGACATAGAAATTCCACCACCAAAAAGAGCACGTGTATCAAGTTCAAATTTGCTTGCT
CGTAATCATTCTATCAATAATAACAATAATGATTCAATCAGCTCATCAGAAATGGTTTCA
CAAAAAGAATATTCCTCACCAGTGCCTCGTTCACGTGTTGCTCGTGCAGTCATTGATCGT
CCAGAGATCATTTATACTAAACCAGAGTACTCTGAATTGGATGTAAAAACTATTACAGAT
ACATTGAAATCAAAGAAAATAACTGCATCTACGAGTAAATTTGGTTTCATTGGTCTCGGC
ATTATGGGTAGTGGCATAGTCAAAA
>g4451.t3 Gene=g4451 Length=288
MNDTVSLHIGDLVWAKMKGYCAWPGRIVEASDHLQKSRKTEKSQCVYFFGTHNYAWIEDN
NVYPYLDYKDQMLKLGKPKTTFDRAVNEIEAYMKDPTASETIITPARKKSLPKVRQSITS
ADESIVKEEIAEDINDVASGVEEDEIETPKKVVAKVPVKKNSTQKKSKVMSAKKKAEVDS
GDIEIPPPKRARVSSSNLLARNHSINNNNNDSISSSEMVSQKEYSSPVPRSRVARAVIDR
PEIIYTKPEYSELDVKTITDTLKSKKITASTSKFGFIGLGIMGSGIVK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g4451.t3 | Gene3D | G3DSA:2.30.30.140 | - | 2 | 102 | 0.00 |
| 2 | g4451.t3 | PANTHER | PTHR12550 | HEPATOMA-DERIVED GROWTH FACTOR-RELATED | 8 | 220 | 0.00 |
| 1 | g4451.t3 | Pfam | PF00855 | PWWP domain | 8 | 93 | 0.00 |
| 6 | g4451.t3 | ProSiteProfiles | PS50812 | PWWP domain profile. | 9 | 68 | 15.59 |
| 4 | g4451.t3 | SMART | SM00293 | PWWP_4 | 7 | 66 | 0.00 |
| 3 | g4451.t3 | SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 3 | 100 | 0.00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
