General information for g4451.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative oxidoreductase GLYR1-like protein.
Parent gene
- The parent gene g4451 is located on chr_2: 2444865..2445921 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4451 | g4451.t5 | TSS | g4451.t5 | 2442641 | 2442641 |
| chr_2 | g4451 | g4451.t5 | isoform | g4451.t5 | 2443321 | 2444660 |
| chr_2 | g4451 | g4451.t5 | exon | g4451.t5.exon1 | 2443321 | 2443436 |
| chr_2 | g4451 | g4451.t5 | cds | g4451.t5.CDS1 | 2443359 | 2443436 |
| chr_2 | g4451 | g4451.t5 | exon | g4451.t5.exon2 | 2443498 | 2443695 |
| chr_2 | g4451 | g4451.t5 | cds | g4451.t5.CDS2 | 2443498 | 2443695 |
| chr_2 | g4451 | g4451.t5 | exon | g4451.t5.exon3 | 2443760 | 2444660 |
| chr_2 | g4451 | g4451.t5 | cds | g4451.t5.CDS3 | 2443760 | 2444659 |
| chr_2 | g4451 | g4451.t5 | TTS | g4451.t5 | NA | NA |
Sequences
>g4451.t5 Gene=g4451 Length=1215
ACAACAATGTTTATCCATATCTCGATTATAAAGATCAAATGCTTAAACTTGGCAAGCCTA
AAACGACATTTGATAGAGCAGTTAATGAAATTGAAGCATATATGAAAGATCCTACCGCAT
CTGAAACAATAATAACACCGGCAAGGAAAAAATCGCTACCCAAAGTAAGACAATCAATAA
CGTCAGCAGATGAGAGCATTGTTAAAGAGGAAATTGCAGAAGATATAAACGATGTTGCAA
GTGGAGTTGAAGAAGATGAGATTGAAACGCCAAAGAAAGTTGTTGCAAAAGTTCCAGTCA
AGAAGAATTCGACAAAAAAGTCAAAAGTAATGAGTGCAAAGAAAAAAGCTGAAGTTGATA
GCGGTGACATAGAAATTCCACCACCAAAAAGAGCACGTGTATCAAGTTCAAATTTGCTTG
CTCGTAATCATTCTATCAATAATAACAATAATGATTCAATCAGCTCATCAGAAATGGTTT
CACAAAAAGAATATTCCTCACCAGTGCCTCGTTCACGTGTTGCTCGTGCAGTCATTGATC
GTCCAGAGATCATTTATACTAAACCAGAGTACTCTGAATTGGATGTAAAAACTATTACAG
ATACATTGAAATCAAAGAAAATAACTGCATCTACGAGTAAATTTGGTTTCATTGGTCTCG
GCATTATGGGTAGTGGCATAGTCAAAAATCTTATCAACTCTGGACATGAAGTATATGTTT
ATAATCGAACTAAAGACAAAACACTAAAGTTTGAGGAAGCTGGTGCTACTGTTTTGATTA
CACCAAGTGATGTAGTCGAAAATTCTGATATAACGTTCTCGTGTGTATCCGATCCACAAG
CACTGAGAGATACAATTTTTGGAACTTATGGCGTTAGCTCATTACAACCTGAATTAGCTC
AAGGAAAAGGATATGTTGAAATGACAACAATTGATGCTGACACATCGAGAGATATTGAAA
GTGCATTGACATCGATAGGCATGCAATATTTGGAAGCACAAATTCATGGTACAAAAGAGC
AAGCTGAAGAGGGAAAGCTTATTATTTTAGCAGCAGGTAGCAAACAAATTTTCGACTCCT
GTCAAACATGCTTTGAAGCTATGGGTAGAAATTCATTTTTTGTTGGTGAAACGGGAAATG
CAACAAAAATGAATTTAGTTTTACAAGCTATTTCGGGTGTAACTATTGCTGGACTTGCAG
ATTCTCTAGCACTTG
>g4451.t5 Gene=g4451 Length=392
MLKLGKPKTTFDRAVNEIEAYMKDPTASETIITPARKKSLPKVRQSITSADESIVKEEIA
EDINDVASGVEEDEIETPKKVVAKVPVKKNSTKKSKVMSAKKKAEVDSGDIEIPPPKRAR
VSSSNLLARNHSINNNNNDSISSSEMVSQKEYSSPVPRSRVARAVIDRPEIIYTKPEYSE
LDVKTITDTLKSKKITASTSKFGFIGLGIMGSGIVKNLINSGHEVYVYNRTKDKTLKFEE
AGATVLITPSDVVENSDITFSCVSDPQALRDTIFGTYGVSSLQPELAQGKGYVEMTTIDA
DTSRDIESALTSIGMQYLEAQIHGTKEQAEEGKLIILAAGSKQIFDSCQTCFEAMGRNSF
FVGETGNATKMNLVLQAISGVTIAGLADSLAL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g4451.t5 | Gene3D | G3DSA:3.40.50.720 | - | 184 | 363 | 0 |
| 2 | g4451.t5 | PANTHER | PTHR43580 | OXIDOREDUCTASE GLYR1-RELATED | 195 | 392 | 0 |
| 3 | g4451.t5 | PANTHER | PTHR43580:SF2 | OXIDOREDUCTASE GLYR1-RELATED | 195 | 392 | 0 |
| 1 | g4451.t5 | Pfam | PF03446 | NAD binding domain of 6-phosphogluconate dehydrogenase | 201 | 363 | 0 |
| 4 | g4451.t5 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 201 | 364 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0050661 | NADP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
