General information for g4464.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Arrestin-like protein.
Parent gene
- The parent gene g4464 is located on chr_2: 2714856..2716322 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4464 | g4464.t1 | TTS | g4464.t1 | 2714697 | 2714697 |
| chr_2 | g4464 | g4464.t1 | isoform | g4464.t1 | 2714856 | 2716322 |
| chr_2 | g4464 | g4464.t1 | exon | g4464.t1.exon1 | 2714856 | 2715081 |
| chr_2 | g4464 | g4464.t1 | cds | g4464.t1.CDS1 | 2714856 | 2715081 |
| chr_2 | g4464 | g4464.t1 | exon | g4464.t1.exon2 | 2715142 | 2715349 |
| chr_2 | g4464 | g4464.t1 | cds | g4464.t1.CDS2 | 2715142 | 2715349 |
| chr_2 | g4464 | g4464.t1 | exon | g4464.t1.exon3 | 2715407 | 2715575 |
| chr_2 | g4464 | g4464.t1 | cds | g4464.t1.CDS3 | 2715407 | 2715575 |
| chr_2 | g4464 | g4464.t1 | exon | g4464.t1.exon4 | 2715644 | 2716024 |
| chr_2 | g4464 | g4464.t1 | cds | g4464.t1.CDS4 | 2715644 | 2716024 |
| chr_2 | g4464 | g4464.t1 | exon | g4464.t1.exon5 | 2716152 | 2716322 |
| chr_2 | g4464 | g4464.t1 | cds | g4464.t1.CDS5 | 2716152 | 2716322 |
| chr_2 | g4464 | g4464.t1 | TSS | g4464.t1 | 2716420 | 2716420 |
Sequences
>g4464.t1 Gene=g4464 Length=1155
ATGGTTGTTAATTTCAAAGTTTACAAGAAGAGTTCACCAAATAACAAAGTCCATTTATAT
ATGGCAAAGCGTGATTTTGTAGATCACATCAGTGCTGTGGAACCAATTGATGGAGTTATT
GTTTTAGATGATGAATACATTGGAGAACGCCGTAAAATTTTTGGTCAATTGGTATGCAGT
TTTAGATACGGAAGAGAAGAAGATGAAGTTATGGGATTAAATTTTCAAAAAGAACTTTTC
TTAGCTTCAGAGCAACTATATCCACCTCCCCAAAAAGCTGATCCATTGAAACCAGCTATG
AGTAAAACTCAAGAGCGTTTATTGAGAAAACTTGGACAAAATGCAATTCCATTTTCATTC
ATAATTCCACCATCTGCACCAGCTTCAATTACATTGCAGCAAGCTAAAGATGAGACTGGC
GAACCATGCGGTGTTCAATATTATGTGAAAATTTTCGCTGGTGATTCTGAGACTGATCGC
TCACATCGTCGTTCGACTGTAAGTTTGGGCATTAGAAAAGTTCAATATGCTCCAAGCAAA
CAAGGAAATCAACCATGCACGGTTGTAAGAAAAGATTTCATGTTATCACCTGGTGAGCTT
GAAATGGAAGTAACATTGGATAAGCAGTTGTATCATCATGGTGAAAAAATTGCTGTTAAT
TTGTGCATCAGAAATCACTCGAATAAGGTTGTGAAAAAAATCAAAGCTATGGTTCAACAA
GGTGTCGATGTTGTCTTATTCCAAAATGGTCAATATCGAAATACAATTGTTTCAATTGAA
ACGGCTGAGGGTTGCCCATTGCAACCAGGAAGCTCACTTCAAAAAGTTATTTATCTTCAT
CCAATGCTGTCAAGTGTTCAGAACAAACGCGGAATTGCACTTGATGGAAAATTGAAACAA
CAAGATACCAATTTGGCCTCAACAACCTTACTTGCATCACCAGACCAACGAGATGCATTT
GGAATAATTGTCTCATATGCTGTGAAAGTTAAGCTTTTCCTCGGAGCATTAGGTGGTGAA
GTTACTGCTGAACTTCCATTTGTTTTGATGTTCCCAAAACCAACTATCAAAGGCAAACTT
GTCACGCAAGATTCGCAAGCTGAAGTGGCAATGTTCAGACAAGATACAGTCATGGATCCA
GAAGCTGATGAATAA
>g4464.t1 Gene=g4464 Length=384
MVVNFKVYKKSSPNNKVHLYMAKRDFVDHISAVEPIDGVIVLDDEYIGERRKIFGQLVCS
FRYGREEDEVMGLNFQKELFLASEQLYPPPQKADPLKPAMSKTQERLLRKLGQNAIPFSF
IIPPSAPASITLQQAKDETGEPCGVQYYVKIFAGDSETDRSHRRSTVSLGIRKVQYAPSK
QGNQPCTVVRKDFMLSPGELEMEVTLDKQLYHHGEKIAVNLCIRNHSNKVVKKIKAMVQQ
GVDVVLFQNGQYRNTIVSIETAEGCPLQPGSSLQKVIYLHPMLSSVQNKRGIALDGKLKQ
QDTNLASTTLLASPDQRDAFGIIVSYAVKVKLFLGALGGEVTAELPFVLMFPKPTIKGKL
VTQDSQAEVAMFRQDTVMDPEADE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g4464.t1 | Gene3D | G3DSA:2.60.40.840 | - | 3 | 179 | 1.3E-71 |
| 14 | g4464.t1 | Gene3D | G3DSA:2.60.40.640 | - | 183 | 382 | 1.2E-66 |
| 3 | g4464.t1 | PANTHER | PTHR11792 | ARRESTIN | 1 | 380 | 1.1E-175 |
| 4 | g4464.t1 | PANTHER | PTHR11792:SF16 | PHOSRESTIN-2 | 1 | 380 | 1.1E-175 |
| 6 | g4464.t1 | PRINTS | PR00309 | Arrestin signature | 23 | 45 | 1.7E-31 |
| 7 | g4464.t1 | PRINTS | PR00309 | Arrestin signature | 61 | 79 | 1.7E-31 |
| 8 | g4464.t1 | PRINTS | PR00309 | Arrestin signature | 158 | 175 | 1.7E-31 |
| 5 | g4464.t1 | PRINTS | PR00309 | Arrestin signature | 285 | 303 | 1.7E-31 |
| 1 | g4464.t1 | Pfam | PF00339 | Arrestin (or S-antigen), N-terminal domain | 18 | 176 | 5.6E-24 |
| 2 | g4464.t1 | Pfam | PF02752 | Arrestin (or S-antigen), C-terminal domain | 197 | 352 | 4.1E-26 |
| 12 | g4464.t1 | ProSitePatterns | PS00295 | Arrestins signature. | 61 | 79 | - |
| 11 | g4464.t1 | SMART | SM01017 | Arrestin_C_2 | 196 | 354 | 2.7E-25 |
| 10 | g4464.t1 | SUPERFAMILY | SSF81296 | E set domains | 4 | 178 | 9.8E-66 |
| 9 | g4464.t1 | SUPERFAMILY | SSF81296 | E set domains | 180 | 357 | 3.17E-50 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007165 | signal transduction | BP |
KEGG
Orthology
- This transcript has been annotated with K13808 (arrestin-1)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
