General information for g4466.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4466 is located on chr_2: 2723318..2724711 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4466 | g4466.t1 | isoform | g4466.t1 | 2721340 | 2724711 |
| chr_2 | g4466 | g4466.t1 | exon | g4466.t1.exon1 | 2721340 | 2721561 |
| chr_2 | g4466 | g4466.t1 | cds | g4466.t1.CDS1 | 2721340 | 2721561 |
| chr_2 | g4466 | g4466.t1 | exon | g4466.t1.exon2 | 2721722 | 2721954 |
| chr_2 | g4466 | g4466.t1 | cds | g4466.t1.CDS2 | 2721722 | 2721954 |
| chr_2 | g4466 | g4466.t1 | exon | g4466.t1.exon3 | 2722021 | 2722370 |
| chr_2 | g4466 | g4466.t1 | cds | g4466.t1.CDS3 | 2722021 | 2722370 |
| chr_2 | g4466 | g4466.t1 | exon | g4466.t1.exon4 | 2722433 | 2722476 |
| chr_2 | g4466 | g4466.t1 | cds | g4466.t1.CDS4 | 2722433 | 2722476 |
| chr_2 | g4466 | g4466.t1 | exon | g4466.t1.exon5 | 2723815 | 2723825 |
| chr_2 | g4466 | g4466.t1 | cds | g4466.t1.CDS5 | 2723815 | 2723825 |
| chr_2 | g4466 | g4466.t1 | exon | g4466.t1.exon6 | 2724708 | 2724711 |
| chr_2 | g4466 | g4466.t1 | cds | g4466.t1.CDS6 | 2724708 | 2724711 |
| chr_2 | g4466 | g4466.t1 | TTS | g4466.t1 | 2725565 | 2725565 |
| chr_2 | g4466 | g4466.t1 | TSS | g4466.t1 | NA | NA |
Sequences
>g4466.t1 Gene=g4466 Length=864
ATGGAAAATATAACAAATGATTCTATTGACTGTATTGATGGCATTCCATCAGCTGATGAG
TTTTTTGCGAGTCTAAATTTCTTATACAAATGGATTTTAGTTATACCAACCGGCTTTTTT
CTAATGACTGTGACGATTTATATACTCAATCTATACACAGTTATTAAATATGGAAAAAGA
GAAACAAAGTCCAACGTGTTGATTCTACTGACATTATATCCAACTGTTGCACTCGTATCA
TTGATCTCGATCTTCATGCCAAAAACATATTTTTTCTGTGACTTTATTGCGCACACATTT
TTCGTCATTTCGTCTTATCAACTTTATCGATATTGTATCAACTGCATCGAAGGTGAATCA
AAATTTATCGCTATATCAAAAAATGAGTCATTTACATTAAAAACACCTCCCGTTTGTTGT
TGCTGTTTGTGCTTTAGTACATCAATGATAACAAAAAAAAAATTTCTATGGATAAGATTA
TTAGTTTTACAAATGGCAGTTGTGCATGTCATCATATTCTCAATTTTAAATCTCATAAAT
ATTGAAAATCCGCCAATAGTTGACTATCTTATGCTTTATTTTCTGCCAGTTATAGCCACT
TCAATCTTATTAGCAGTATGGGGCTTCAATGTTATAATAAGAATGCTTGTGCCTTACTAT
TCAAATTTAAATCTGTTGAAGAAATTTTTAGCCTTCCAATTAGTCCTTGTGTCTTGCAAA
TTTCAACCAGTATTACTTAATCTTATTTTGAGAAACTATATTGAGACTTGTGATGGAGCA
ATCACAGTTGTAGTCAAAATAAGAACTATAACGCAAATATTTATTCAGTTTGAAATGATA
ATATTATCGGACTCTAAATTTTGA
>g4466.t1 Gene=g4466 Length=287
MENITNDSIDCIDGIPSADEFFASLNFLYKWILVIPTGFFLMTVTIYILNLYTVIKYGKR
ETKSNVLILLTLYPTVALVSLISIFMPKTYFFCDFIAHTFFVISSYQLYRYCINCIEGES
KFIAISKNESFTLKTPPVCCCCLCFSTSMITKKKFLWIRLLVLQMAVVHVIIFSILNLIN
IENPPIVDYLMLYFLPVIATSILLAVWGFNVIIRMLVPYYSNLNLLKKFLAFQLVLVSCK
FQPVLLNLILRNYIETCDGAITVVVKIRTITQIFIQFEMIILSDSKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g4466.t1 | PANTHER | PTHR23423:SF21 | ORGANIC SOLUTE TRANSPORTER ALPHA-LIKE PROTEIN | 4 | 283 | 2.7E-36 |
| 3 | g4466.t1 | PANTHER | PTHR23423 | ORGANIC SOLUTE TRANSPORTER-RELATED | 4 | 283 | 2.7E-36 |
| 1 | g4466.t1 | Pfam | PF03619 | Organic solute transporter Ostalpha | 34 | 283 | 4.4E-22 |
| 12 | g4466.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 30 | - |
| 17 | g4466.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 31 | 54 | - |
| 9 | g4466.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 55 | 65 | - |
| 18 | g4466.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 66 | 83 | - |
| 15 | g4466.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 84 | 88 | - |
| 16 | g4466.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 89 | 109 | - |
| 11 | g4466.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 110 | 155 | - |
| 20 | g4466.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 156 | 179 | - |
| 14 | g4466.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 180 | 190 | - |
| 19 | g4466.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 191 | 217 | - |
| 10 | g4466.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 218 | 228 | - |
| 21 | g4466.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 229 | 250 | - |
| 13 | g4466.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 251 | 287 | - |
| 6 | g4466.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 31 | 53 | - |
| 5 | g4466.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 66 | 85 | - |
| 4 | g4466.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 95 | 113 | - |
| 8 | g4466.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 157 | 179 | - |
| 7 | g4466.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 189 | 211 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K14360 (organic solute transporter subunit alpha)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
