General information for g4476.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Luciferin 4-monooxygenase.
Parent gene
- The parent gene g4476 is located on chr_2: 2756398..2757191 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4476 | g4476.t2 | TTS | g4476.t2 | 2754992 | 2754992 |
| chr_2 | g4476 | g4476.t2 | isoform | g4476.t2 | 2755271 | 2757191 |
| chr_2 | g4476 | g4476.t2 | exon | g4476.t2.exon1 | 2755271 | 2755575 |
| chr_2 | g4476 | g4476.t2 | cds | g4476.t2.CDS1 | 2755271 | 2755575 |
| chr_2 | g4476 | g4476.t2 | exon | g4476.t2.exon2 | 2755630 | 2756128 |
| chr_2 | g4476 | g4476.t2 | cds | g4476.t2.CDS2 | 2755630 | 2756128 |
| chr_2 | g4476 | g4476.t2 | exon | g4476.t2.exon3 | 2756193 | 2756413 |
| chr_2 | g4476 | g4476.t2 | cds | g4476.t2.CDS3 | 2756193 | 2756396 |
| chr_2 | g4476 | g4476.t2 | exon | g4476.t2.exon4 | 2756472 | 2756621 |
| chr_2 | g4476 | g4476.t2 | exon | g4476.t2.exon5 | 2756683 | 2756753 |
| chr_2 | g4476 | g4476.t2 | exon | g4476.t2.exon6 | 2756809 | 2757016 |
| chr_2 | g4476 | g4476.t2 | exon | g4476.t2.exon7 | 2757072 | 2757191 |
| chr_2 | g4476 | g4476.t2 | TSS | g4476.t2 | 2757220 | 2757220 |
Sequences
>g4476.t2 Gene=g4476 Length=1574
ATGGATGATCCAAATATTATTTACGGTGGTGATTTTGAGAATAATTATTACTTAAATTTA
TCATCAATTGGTGAATTAATTTTAAAAAATTTAAAACTTGGTGGATCGAAACATGGTTTT
ATTAATGGTCAAACAGGAGAATCATGGAGTTATGATGAAATTCTTAAGTTTAGTATTAAA
ATTTCTCAAGCCTTGAATAATGTTGGAGTAAAACAAAACGATATAATATCAATTGTTGCT
GAAAACTGTCATCAATACATGACTGTTGCATGTGGAACATTTTTAATGAATGCAATTCTC
GCACCATTTAATTATACCTACACAAAGCGGGAACTCAAGCATGCTTTTGAATTGATAAAC
CCAAAGATTGTTTTCGTATCTTCAAGCACAGTAAAAAATAACATGAAAGTGCTATTCCAC
TCAAAAAATTCATTGAGAACTATTCAAATGCATCTTTTGACCTGCCTCAACGTTCAATAA
AAGCTATAGATAAGGAAAAGAAAACGGTGATAATTTTTCAAAGTAGTGGGACAACTGGTT
TACCAAAAGGAGTAGAAATTACACATATGAACATTCTTTCTTGTAAACAGGGTTATAATG
ATGATTTCAAGTATTTAAAACCCTATGGTGAAAATCTTTCAAATTTGGGCATTGCACCGT
GGTCGCATGTCATGGGCTTTATGGGTTCTTTTTTTGCTCTTTTGAGTCCCGAAAGAGTTC
ATATTTTTCTACCTAAATTTGAGGGTGAAACCTATTTAAAATGTCTTGAGAAATATAAAG
TAAAAATTATTGCCGTTCCACCACCAATTATTGTGTTTCTTACTAAAACTCCACTATTTG
ATAAATATGACTTGACAAATTTAAGAGTAATTTTTTCTGGAGCTGCACCATTAGCTAAAG
ACGTTGAATTGGCTGCAATAAAAAGATTCAACAATAGAATCATCATTTGTCAAGGATATG
GCATGTCTGAAACAACTTTGGGTGTAACTGGAACTTTTGTTCAACTAAAACATGGGTCAG
TTGGAAAAGTTGGTTATGGCATGTATGCAAAAGTAATTGACAGCAATGGAAAATCTTTAG
GTCCAAACAAAGTTGGTGAATTATGTTTCAAAGGTTCAAGAATTATGAAAGGATATTTTA
ACAATGCTAAAGCAACTGCTGAAACAATTGATAAAGATGGTTGGTTGCATACAGGTGATT
TGGGATATTTTGATAATGAACATCAATTTTTCATTGTTGACCGATTGAAAGAATTAATCA
AGTACAAAGCTTTTCAAGTTGCTCCAGCTGAAATTGAAGGACTTTTGCTATCACACCCGA
AAATTAAAGATGCAGGTGTGATTGGTATTCCAAATAATGTTGTAGGTGAACTACCTTTTG
CTTTTGTCGTTAAACTACCTGAAGTTGAACTTACCGAGAAAGAAGTGCAAGATTTCATAA
AAGAGAATGCAAGCAATGCCAAATGGTTACGAGGAGGCGTGAAATTTGTCGATGAAATCC
CTAAAAATCCAAGTGGTAAAATTTTGAGAAGAGAATTGAGAGAAGCCTATAAAATTTCAA
GAGCTAAATTGTAA
>g4476.t2 Gene=g4476 Length=335
MNILSCKQGYNDDFKYLKPYGENLSNLGIAPWSHVMGFMGSFFALLSPERVHIFLPKFEG
ETYLKCLEKYKVKIIAVPPPIIVFLTKTPLFDKYDLTNLRVIFSGAAPLAKDVELAAIKR
FNNRIIICQGYGMSETTLGVTGTFVQLKHGSVGKVGYGMYAKVIDSNGKSLGPNKVGELC
FKGSRIMKGYFNNAKATAETIDKDGWLHTGDLGYFDNEHQFFIVDRLKELIKYKAFQVAP
AEIEGLLLSHPKIKDAGVIGIPNNVVGELPFAFVVKLPEVELTEKEVQDFIKENASNAKW
LRGGVKFVDEIPKNPSGKILRRELREAYKISRAKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g4476.t2 | Gene3D | G3DSA:3.40.50.980 | - | 4 | 141 | 0 |
| 8 | g4476.t2 | Gene3D | G3DSA:2.30.38.10 | Luciferase; Domain 3 | 142 | 226 | 0 |
| 7 | g4476.t2 | Gene3D | G3DSA:3.30.300.30 | - | 227 | 333 | 0 |
| 3 | g4476.t2 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 18 | 329 | 0 |
| 4 | g4476.t2 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 18 | 329 | 0 |
| 2 | g4476.t2 | Pfam | PF00501 | AMP-binding enzyme | 23 | 233 | 0 |
| 1 | g4476.t2 | Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 242 | 318 | 0 |
| 5 | g4476.t2 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 19 | 328 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
