General information for g4482.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4482 is located on chr_2: 2775856..2777091 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4482 | g4482.t1 | isoform | g4482.t1 | 2775856 | 2777091 |
| chr_2 | g4482 | g4482.t1 | exon | g4482.t1.exon1 | 2775856 | 2777091 |
| chr_2 | g4482 | g4482.t1 | cds | g4482.t1.CDS1 | 2775856 | 2777091 |
| chr_2 | g4482 | g4482.t1 | TSS | g4482.t1 | 2778024 | 2778024 |
| chr_2 | g4482 | g4482.t1 | TTS | g4482.t1 | NA | NA |
Sequences
>g4482.t1 Gene=g4482 Length=1236
ATGCAACCTGAGTTCAACTCAGAAATGCACGAATTTTCAAAAAATGACCATGTGCAGCAA
GCACAAATAATCAAAAAAGCACGAATCCAGCACACCGTACAAATCCCTACAACAAATCAA
TATGAGATGCTAACTATTGACGACGATGGTCCGAACATCGTTCAAAATGGTCTTAACTCT
CACGCAACATCCTCAAATCCACAACAAAGGCCTCCGCCATTTAATATCATAGGTTTGAAT
ATTTCAACTACTGACAATTTACTCAAACAAATTAAAGTTACAGACTACGAAATCAAGTTG
ACTACTGAAGGTATAAGACTATTTACAAAAACCATTGACATTTTCAAACTAGTTAAAGCA
CATCTACTTGCCAATAAAGTTCAATTTTACACTCACCAACTCCGCGAAGAAAGAATGACC
AAATTTGTTTTACATGGACTTCCTGATACAACTGAAGCTGAAATAAATCAAGGACTTAAC
ACAGCTGGAGTATTTCCTACACTCATCAAGAAGATGAAAATAAAAAGAGCCAGGTATGAT
GGTCATGCTGTTTATCTAATCTATTTTCTAAAAACACAAAATGTCAAACTCAATTGCCTT
GTCGAAAAATGTAAGGTTATATCCTATGTTCGTGTCAAATGGGAGCACTACAAAAATCCT
GAAAAGGGTCCAACTCAATGCAGGAACTGTCTTCGCTATGGCCACGGCAGCAACAATTGT
TCAGCAGCTGCTCGCTGCATTAGATGTGCTTTGAACCACTCCTCTGGTGACTGCCCATTG
CTTAAAGATCAGACTGGTAAAATAGTACGTGATCGTGTTGACAATTCGCTCCTTAAATGC
GCATTGTGCAACCTTAATCATCCTGCTAGCTCAAAAAACTGTCCAAAAAGAAAGGACTTT
ATTAATGCAAAGAAACCACATTACAAATCCTTCAAACGAACTAACACTGAAAAGGGAACA
TTTATTCCTGCACCTCAACTCAATGACTTCAACTTTCCACGTCTGAGTCATAACACAAAA
CAAAAAGATGTTCCTGAACCAACAAAATGGCAAAATAAGTCCACAATTCCAACAGAGGAG
TCCGATCCTCATAATGGTAATGGAAATTTATTTTCTAGAAGCCAACTTCTTTCAATTTTT
ATGGAAATGACTTCGCAATTATCGCAAGCTAAAACCAAGTCTCAACAAGTTCAGATATTA
ATGGATATTGCACTTAAACATTGTGTTAATGAATAA
>g4482.t1 Gene=g4482 Length=411
MQPEFNSEMHEFSKNDHVQQAQIIKKARIQHTVQIPTTNQYEMLTIDDDGPNIVQNGLNS
HATSSNPQQRPPPFNIIGLNISTTDNLLKQIKVTDYEIKLTTEGIRLFTKTIDIFKLVKA
HLLANKVQFYTHQLREERMTKFVLHGLPDTTEAEINQGLNTAGVFPTLIKKMKIKRARYD
GHAVYLIYFLKTQNVKLNCLVEKCKVISYVRVKWEHYKNPEKGPTQCRNCLRYGHGSNNC
SAAARCIRCALNHSSGDCPLLKDQTGKIVRDRVDNSLLKCALCNLNHPASSKNCPKRKDF
INAKKPHYKSFKRTNTEKGTFIPAPQLNDFNFPRLSHNTKQKDVPEPTKWQNKSTIPTEE
SDPHNGNGNLFSRSQLLSIFMEMTSQLSQAKTKSQQVQILMDIALKHCVNE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g4482.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 368 | - |
| 1 | g4482.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 368 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
