General information for g4494.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4494 is located on chr_2: 2889934..2890809 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4494 | g4494.t6 | isoform | g4494.t6 | 2889750 | 2890809 |
| chr_2 | g4494 | g4494.t6 | exon | g4494.t6.exon1 | 2889750 | 2889930 |
| chr_2 | g4494 | g4494.t6 | exon | g4494.t6.exon2 | 2889996 | 2890152 |
| chr_2 | g4494 | g4494.t6 | cds | g4494.t6.CDS1 | 2890119 | 2890152 |
| chr_2 | g4494 | g4494.t6 | exon | g4494.t6.exon3 | 2890210 | 2890809 |
| chr_2 | g4494 | g4494.t6 | cds | g4494.t6.CDS2 | 2890210 | 2890385 |
| chr_2 | g4494 | g4494.t6 | TTS | g4494.t6 | 2891267 | 2891267 |
| chr_2 | g4494 | g4494.t6 | TSS | g4494.t6 | NA | NA |
Sequences
>g4494.t6 Gene=g4494 Length=938
ATTCCGCATAACATATCGTATAATATTGAGAGAAAAGGAACTTCATTTTCACATTGGAGT
TTATAATCCAAGCAAAGATTTAGCATTCTCATTCAATTTATTACTTCATACGTATTTAAA
AGTTCCAGATGTAAGAAGATGCCAAATTACAGGTCTACATGGTTGTACATTCATTGATAA
GACTAGAGATGGTGCAATTTATCAAGAAGGTCGTGAAGTTGTGACCGTAAATGAATGGAC
TGATCGTATTTATCAACATACACAACAAGAACATATAATTACAAATGTTGTATCGGGTAG
AAAAATGCGTCTACAAAAATATAATTTTCCTGATACTGTAATTTGGAATCCATGGATGGA
TAAAGCACGCGAAACTCCCGATTTTGGTGATGATGAATATCCAAACATGCTTTGTGTAGA
AGCTGGTCATGTAAGTCAGCCTGTCCTCTTATTGCCTGGTACAGCTTACGAAGCCTCTCA
AATTCTTCAAGTCATAGTGAATCCGAAGCGGTGAAATTCAAGGAAGGCCAAAAGTGGCCA
AAATCAAAATCAACCTCCAGCTCCTATTCCTCCCGTTCCTCCAACAATCCATCAACCTTC
TCTGCCCCAACATCATAATTCACATATACCACAATCTGCACAGCATCTATCCTTTAATCC
GTACATAAGATAAATCTTTGATATTAAATAATTGCTTGCTTATTCAAGTCTATGCATTTT
AACTTTCCATTTGCTAATTATCATGAAATCATTTTTAGACACTTTTTTATATGCCAAAGG
CAAGGTTTAAAAAAAATTAAATTTTTTTGTTACTTTCTTCTTAATACTATCATGCTAAAA
ACTCATTCATTCATGAGTACTTTCCCTTTTCTTTAAATGTAAAGAAATGTTTTGAAAACT
ATCCATTAAATATAAGTCATTGTAATAATTAACTAAAA
>g4494.t6 Gene=g4494 Length=69
MRLQKYNFPDTVIWNPWMDKARETPDFGDDEYPNMLCVEAGHVSQPVLLLPGTAYEASQI
LQVIVNPKR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g4494.t6 | Gene3D | G3DSA:2.70.98.10 | - | 1 | 66 | 0 |
| 2 | g4494.t6 | PANTHER | PTHR11122:SF13 | GLUCOSE-6-PHOSPHATE 1-EPIMERASE | 2 | 63 | 0 |
| 3 | g4494.t6 | PANTHER | PTHR11122 | APOSPORY-ASSOCIATED PROTEIN C-RELATED | 2 | 63 | 0 |
| 1 | g4494.t6 | Pfam | PF01263 | Aldose 1-epimerase | 7 | 61 | 0 |
| 4 | g4494.t6 | SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 2 | 61 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0030246 | carbohydrate binding | MF |
| GO:0016853 | isomerase activity | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
