General information for g4495.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein naked cuticle-like protein.
Parent gene
- The parent gene g4495 is located on chr_2: 2893629..2900373 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4495 | g4495.t1 | TTS | g4495.t1 | 2892936 | 2892936 |
| chr_2 | g4495 | g4495.t1 | isoform | g4495.t1 | 2893629 | 2900373 |
| chr_2 | g4495 | g4495.t1 | exon | g4495.t1.exon1 | 2893629 | 2894403 |
| chr_2 | g4495 | g4495.t1 | cds | g4495.t1.CDS1 | 2893629 | 2894403 |
| chr_2 | g4495 | g4495.t1 | exon | g4495.t1.exon2 | 2894481 | 2894671 |
| chr_2 | g4495 | g4495.t1 | cds | g4495.t1.CDS2 | 2894481 | 2894671 |
| chr_2 | g4495 | g4495.t1 | exon | g4495.t1.exon3 | 2894902 | 2895980 |
| chr_2 | g4495 | g4495.t1 | cds | g4495.t1.CDS3 | 2894902 | 2895980 |
| chr_2 | g4495 | g4495.t1 | exon | g4495.t1.exon4 | 2900322 | 2900373 |
| chr_2 | g4495 | g4495.t1 | cds | g4495.t1.CDS4 | 2900322 | 2900373 |
| chr_2 | g4495 | g4495.t1 | TSS | g4495.t1 | 2900943 | 2900943 |
Sequences
>g4495.t1 Gene=g4495 Length=2097
ATGGCAGGAAATATCGTTAAATGGTGGCGACAATTTAGACAATATAAAACAGTGTTGCAT
GAATATACGACAGACTCAGAGGAGCTGATCCATAAAGCACCATCAGAATGTAGTGCTTCA
ACTCATGATTATTTACCAATTGATGTTCAACAAAAGTCACAAATTCAGCAAAAACAGCAA
CAAGAACAACAACAATCACAATCTCAACAGAAACAACATAGCAGTAGCAGCAGCAATCCA
GTTACAAAGCAAATTCCAAAAGCTCAACAACCCCAACAAGTAGTTATAAAATCATCGAAG
AATATTAAAGTTAAGGAATTTCATGGAAAAGACAGTAATAAGAATGAGGAAGAAGCATTA
GAAAGACTGCGTAAACGTCATAGCATTTCAACAACGCATCATTTAGAGCAACTTGAAACA
AATCGAGTTCAATTTAATCAATTATCTTGCGATGTTTCATTAGATGACACTACAGTTAAG
AAACCTCAACCGATACAATTTTCATTTACACTTTATGACTTAGATGGTCATGGTCATGGT
AAAATAACTAAAGATGATATTGCGAGCATCGTATCAACAATTTATGACTCAATTGGAAGT
GTTGTCGTACCACATTATGGTAAAAAGACCATAAATGTAAAGTTGACTGTTTCACCCGAT
GTTAAGAAGCAAGAGCTTCAAGAAAATTCTGCAAATAATAATGATCAAAAGACTAGCAAG
AAAAATATTACTTTGATACCAAGAAGGCGATATAAAGCACGAGTGCTACTGAGTGACGAG
GAAAATGATGAAGGTAGCGAGTCAGATTCAGAAAATATCTCGCCAATAGTCAAATTACAA
AATGATATTATGCATAGTACTCCTAAAGTTTATGAAAACTTTGACAATGAAAAAAACAAC
ATTTACGAATCAATCAACAATCTCAAATGCTGTAATCAGTCTTCGACAATGGAGAATTTG
TATACGAAAAACTTGAAGCAAATAGGAACTTATAAGAATTGCCAGTTAATTAACTCTAAT
GAAAGACTACATATTGTAGAGAATGATGATGACCTCATATTGAAGACAAAGAATCATCAT
AATGTACCAAGGAAGAGAATCATTAGGAAACAAAGATCACAAAAGCATAAGTTGTCTGAT
AGAGCAACAGCAGCACGTGCACGATCGTTATCAGTTGGAGATGAATGGAGGAAAAATCAG
GAAAATCAAAAATGTAATAAAAATTGTGAATTGAATAATAGCAGCAATTTAAGGCGCCAT
GAACTGATAGAAATTATTCGTGAGAGTATGGAAAAGAACAAATTGTGCTTTCAAAGCAAT
AAGAAAGCTACCAATACAGATAGAATAAATCAAGGCCGTCAACGCTCCAATACAATTACA
TGCACAAATAAAATGACAACAGTGGAAGTTGAAAAATGTTTAGCGGAAAAATGTACAGCA
GAACTCGACCAGCATCATCTGTGCGCATTTGACTCGTTTCTTCATGCAACTGTATGTTCA
AAATTAAGCAATAATCACAGTAATAATCAAACAAAGGCGAAACATATGAATCAAACCATC
CCAACTGGACTTAAGCTTAAGACATCATTGCTAAATCAACTTAATCCCAATCTTACATCA
GAGCAACGACTCGCACGCAAATTGAATGATGTCGAAAAGTGGATGCGTGAGACAGCAATT
CATGAGGCGAAAATTAAAGCTAATGACGAAAAAAATATTCTCAGTCCGATCAATGTCGAT
AAATTGTCCACGAATGTCACATCGGCACGGCACAAAAAGCCTTTTGACAAGGAGATTTTA
ATTACAAAAAAATCAAAATCTTCATCGCCGCACCGTTCAAAGCAGCAAAAAGATGCCATT
AACAATATTAAAAATCAGGCGGTGCTTGAAATTCTTGGTGATACAAGTGAGTGCGAAAAT
CTGATTAGCATGTCAGATGAAGATGAAGTTGAACAGACAGCAGCAGTTGATGTAAATAAT
AAAACCGAATTGCCAGTGCAAGAAAGATCAGAGGATGCATCAAAATCCTCATCCGTACGA
TTTGTTCACATTCATCATCATTTTTATCATTTTGAGAACAATGCCAAGAGCTCTTAA
>g4495.t1 Gene=g4495 Length=698
MAGNIVKWWRQFRQYKTVLHEYTTDSEELIHKAPSECSASTHDYLPIDVQQKSQIQQKQQ
QEQQQSQSQQKQHSSSSSNPVTKQIPKAQQPQQVVIKSSKNIKVKEFHGKDSNKNEEEAL
ERLRKRHSISTTHHLEQLETNRVQFNQLSCDVSLDDTTVKKPQPIQFSFTLYDLDGHGHG
KITKDDIASIVSTIYDSIGSVVVPHYGKKTINVKLTVSPDVKKQELQENSANNNDQKTSK
KNITLIPRRRYKARVLLSDEENDEGSESDSENISPIVKLQNDIMHSTPKVYENFDNEKNN
IYESINNLKCCNQSSTMENLYTKNLKQIGTYKNCQLINSNERLHIVENDDDLILKTKNHH
NVPRKRIIRKQRSQKHKLSDRATAARARSLSVGDEWRKNQENQKCNKNCELNNSSNLRRH
ELIEIIRESMEKNKLCFQSNKKATNTDRINQGRQRSNTITCTNKMTTVEVEKCLAEKCTA
ELDQHHLCAFDSFLHATVCSKLSNNHSNNQTKAKHMNQTIPTGLKLKTSLLNQLNPNLTS
EQRLARKLNDVEKWMRETAIHEAKIKANDEKNILSPINVDKLSTNVTSARHKKPFDKEIL
ITKKSKSSSPHRSKQQKDAINNIKNQAVLEILGDTSECENLISMSDEDEVEQTAAVDVNN
KTELPVQERSEDASKSSSVRFVHIHHHFYHFENNAKSS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g4495.t1 | Coils | Coil | Coil | 52 | 72 | - |
| 3 | g4495.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 99 | - |
| 4 | g4495.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 119 | - |
| 6 | g4495.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 119 | - |
| 5 | g4495.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 677 | - |
| 1 | g4495.t1 | PANTHER | PTHR22611 | PROTEIN NAKED CUTICLE | 1 | 695 | 3.7E-57 |
| 2 | g4495.t1 | PANTHER | PTHR22611:SF9 | PROTEIN NAKED CUTICLE | 1 | 695 | 3.7E-57 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0030178 | negative regulation of Wnt signaling pathway | BP |
KEGG
Orthology
- This transcript has been annotated with K03213 (naked cuticle)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
