Gene loci information

Transcript annotation

  • This transcript has been annotated as Prolyl endopeptidase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4497 g4497.t1 TTS g4497.t1 2909797 2909797
chr_2 g4497 g4497.t1 isoform g4497.t1 2909883 2912184
chr_2 g4497 g4497.t1 exon g4497.t1.exon1 2909883 2911752
chr_2 g4497 g4497.t1 cds g4497.t1.CDS1 2909883 2911752
chr_2 g4497 g4497.t1 exon g4497.t1.exon2 2911814 2911998
chr_2 g4497 g4497.t1 cds g4497.t1.CDS2 2911814 2911998
chr_2 g4497 g4497.t1 exon g4497.t1.exon3 2912116 2912184
chr_2 g4497 g4497.t1 cds g4497.t1.CDS3 2912116 2912184
chr_2 g4497 g4497.t1 TSS g4497.t1 2912310 2912310

Sequences

>g4497.t1 Gene=g4497 Length=2124
ATGGCACCATCAATTCAATATCCGCAAGTGAGAAAAGAAGAAATTACTGAAACCTTTTTT
GGCCATAAAATTTCTGATCCATATAGATATTTAGAAAATCCAGATAGTGAAGAAACGAAA
CAATTCATAGACAATCAAAATTTGATTTCTAAACCCTTTCTTGAGGAAAATGAATTTTGG
GGAAAAATCAATAAAAAACTTACAGACCTATGGAACTTTGAAAAGTATAATGTTGCATAT
AAGCGAGGAAAGAGATATTTTTACTCGTACAATACTGGTCTACAAAATCAAAATGTAATT
TATTATCAAGAATCGCTTGATGGTGAGAGAAAAGTCTTTCTCGATCCAAATGAACTCTCA
TCAGATGGAACGGTTGCTCTGCAAAGTCTGCATTTTACAAAGGATGGATCTTTGTTAGCA
TATGGATTGTCAGAAAGTGGTAGTGATTGGGTAAAAATCAAGTTTAGGGATGTTGAGAAG
AATGAAGATTTCCCTGAAACACTTGAGCATAGCAAATTCTTTACACCTACTTGGACGCAT
GATAATAAAGGTGTATTTTATGGAAAATTTCTACCTCAAGGAACTGCTGATGGTTGCGAA
ACTAATGCAAATGAGAATCAAAAAGTGTACTATCATAGAATAGGCACATCACAAGATTCT
GATGTTCTCGTGGCTGAATTTCCTGAGGAACCGAATTGGCGTTTTTCAGCAGAAGTATCT
GATTGTGGTCATTATTTATTATTTTATGTTATGTATGGTTGCAATGATCACCTTATTTAT
TTTGCTGATTTGCGAAAAACACCTGAAATAACAGGAAAATTGGAATTTACAAAAGTTGTA
ACAGAATTCAAGAATGATTATGATTACATCACAAATAATGAAAGTATTTTCTATTTCCGT
ACTAATAAAGGAGCACCAAATTATCATATAATTGCAATAGATTTTGAAAACTATGAAGAA
TCAAATTGGAAAACTTTAGTGCCAGAGCATCCAAAGAATGTTTTAGATTGGGCATATTGC
GTCCATAAAAATAAAATGATACTTCATTATATGATTGATGTCAAATCATCATTGCAAGTT
TATTCACTAGATACGGGTAAATTTGAATTTGAATTTAAACTCGATTATGGCTGTATTCAA
GGCTTCTCTGGAGAGCGTGATTCAAGTGAAATATTCTTTCAATTTGTTAGCTTTCTTATT
CCTGGCACGATTTATCATTATGATTTTAATTCTACTGATTCAGAACCGAAGATTTTCAAA
GATGTAACAATTGCTGGTTTTAATCGTAAGAATTACAAAGTGGATCAAATCTTTTACAAT
AGTACTGATGGTGAGAAGATTCCAATGTTTATCATAAAAAAGAATGAGAATGAAATTACT
CCTAGACCAACGTTAGTTTCGGGATATGGAGGTTTTAATATTTCAATTCAACCATGCTTT
AGCATTACTTTGCTTGCTTTCATTGATTTATTTGATGGTGTACTCTGTTATCCGAATATA
AGGGGTGGCGGTGAATATGGTGAACGATGGCATAATGGGGGAAGATTATTAAACAAACAA
AATGTTTTCAATGATTTCCAAAGTGCTGCAAAATATTTGATTGACAATAATTATACAAAG
AAGGAACTTCTTGCCATTCAAGGCGGAAGTAATGGAGGATTATTGGTTGGCGCATGCATT
AATCAAAGACCAGATCTTTTTGGTGCTGCTATTGCACAAGTTGGAGTCTTTGATATGCTT
AGATTTCATAAATTCACCATTGGTAGTGCATGGATTTCTGATTTTGGATCACCCGATGAA
GAAAAACATTTTTTAAATTTGCTCAAATATTCACCATTGCACAACACACACACTCCTGAA
AATCCAAATCAAGAATATCCTGCGACACTAATTTTAACAGCTGATCATGATGATCGTGTT
AGTCCATTGCATTCACTTAAATTTAGTGCAACTCTTCAAAATTCTATCAGGAATTCTCCT
TTTCAAAAGAATCCCATCTTATTAAGAGTTTATACAAAGAGTGGTCATGGTTTTGGCAAA
CCAGTAAAGAAAAAGATTGAAGAAGCAACAGATATCCTTACATTCTTGTACAAGACATTA
GATATCAAAGTTGATTTACCATAA

>g4497.t1 Gene=g4497 Length=707
MAPSIQYPQVRKEEITETFFGHKISDPYRYLENPDSEETKQFIDNQNLISKPFLEENEFW
GKINKKLTDLWNFEKYNVAYKRGKRYFYSYNTGLQNQNVIYYQESLDGERKVFLDPNELS
SDGTVALQSLHFTKDGSLLAYGLSESGSDWVKIKFRDVEKNEDFPETLEHSKFFTPTWTH
DNKGVFYGKFLPQGTADGCETNANENQKVYYHRIGTSQDSDVLVAEFPEEPNWRFSAEVS
DCGHYLLFYVMYGCNDHLIYFADLRKTPEITGKLEFTKVVTEFKNDYDYITNNESIFYFR
TNKGAPNYHIIAIDFENYEESNWKTLVPEHPKNVLDWAYCVHKNKMILHYMIDVKSSLQV
YSLDTGKFEFEFKLDYGCIQGFSGERDSSEIFFQFVSFLIPGTIYHYDFNSTDSEPKIFK
DVTIAGFNRKNYKVDQIFYNSTDGEKIPMFIIKKNENEITPRPTLVSGYGGFNISIQPCF
SITLLAFIDLFDGVLCYPNIRGGGEYGERWHNGGRLLNKQNVFNDFQSAAKYLIDNNYTK
KELLAIQGGSNGGLLVGACINQRPDLFGAAIAQVGVFDMLRFHKFTIGSAWISDFGSPDE
EKHFLNLLKYSPLHNTHTPENPNQEYPATLILTADHDDRVSPLHSLKFSATLQNSIRNSP
FQKNPILLRVYTKSGHGFGKPVKKKIEEATDILTFLYKTLDIKVDLP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g4497.t1 Gene3D G3DSA:3.40.50.1820 - 18 696 6.6E-262
14 g4497.t1 Gene3D G3DSA:2.130.10.120 Prolyl oligopeptidase 74 423 6.6E-262
3 g4497.t1 PANTHER PTHR42881:SF2 PROLYL ENDOPEPTIDASE 4 703 3.1E-293
4 g4497.t1 PANTHER PTHR42881 PROLYL ENDOPEPTIDASE 4 703 3.1E-293
10 g4497.t1 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 463 481 2.5E-50
9 g4497.t1 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 490 514 2.5E-50
8 g4497.t1 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 518 537 2.5E-50
7 g4497.t1 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 548 568 2.5E-50
6 g4497.t1 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 603 618 2.5E-50
5 g4497.t1 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 626 648 2.5E-50
1 g4497.t1 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 8 416 2.4E-129
2 g4497.t1 Pfam PF00326 Prolyl oligopeptidase family 492 701 7.2E-58
13 g4497.t1 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 525 555 -
12 g4497.t1 SUPERFAMILY SSF50993 Peptidase/esterase ‘gauge’ domain 2 415 1.23E-98
11 g4497.t1 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 432 700 9.89E-42

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP
GO:0008236 serine-type peptidase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values