General information for g4497.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Prolyl endopeptidase.
Parent gene
- The parent gene g4497 is located on chr_2: 2911052..2912184 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4497 | g4497.t2 | TTS | g4497.t2 | 2909797 | 2909797 |
| chr_2 | g4497 | g4497.t2 | isoform | g4497.t2 | 2909883 | 2910494 |
| chr_2 | g4497 | g4497.t2 | exon | g4497.t2.exon1 | 2909883 | 2910494 |
| chr_2 | g4497 | g4497.t2 | cds | g4497.t2.CDS1 | 2909883 | 2910272 |
| chr_2 | g4497 | g4497.t2 | TSS | g4497.t2 | NA | NA |
Sequences
>g4497.t2 Gene=g4497 Length=612
GAATATGGTGAACGATGGCATAATGGGGGAAGATTATTAAACAAACAAAATGTTTTCAAT
GATTTCCAAAGTGCTGCAAAATATTTGATTGACAATAATTATACAAAGAAGGAACTTCTT
GCCATTCAAGGCGGAAGTAATGGAGGATTATTGGTTGGCGCATGCATTAATCAAAGACCA
GATCTTTTTGGTGCTGCTATTGCACAAGTTGGAGTCTTTGATATGCTTAGATTTCATAAA
TTCACCATTGGTAGTGCATGGATTTCTGATTTTGGATCACCCGATGAAGAAAAACATTTT
TTAAATTTGCTCAAATATTCACCATTGCACAACACACACACTCCTGAAAATCCAAATCAA
GAATATCCTGCGACACTAATTTTAACAGCTGATCATGATGATCGTGTTAGTCCATTGCAT
TCACTTAAATTTAGTGCAACTCTTCAAAATTCTATCAGGAATTCTCCTTTTCAAAAGAAT
CCCATCTTATTAAGAGTTTATACAAAGAGTGGTCATGGTTTTGGCAAACCAGTAAAGAAA
AAGATTGAAGAAGCAACAGATATCCTTACATTCTTGTACAAGACATTAGATATCAAAGTT
GATTTACCATAA
>g4497.t2 Gene=g4497 Length=129
MLRFHKFTIGSAWISDFGSPDEEKHFLNLLKYSPLHNTHTPENPNQEYPATLILTADHDD
RVSPLHSLKFSATLQNSIRNSPFQKNPILLRVYTKSGHGFGKPVKKKIEEATDILTFLYK
TLDIKVDLP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g4497.t2 | Gene3D | G3DSA:3.40.50.1820 | - | 1 | 123 | 0 |
| 2 | g4497.t2 | PANTHER | PTHR42881:SF2 | PROLYL ENDOPEPTIDASE | 1 | 125 | 0 |
| 3 | g4497.t2 | PANTHER | PTHR42881 | PROLYL ENDOPEPTIDASE | 1 | 125 | 0 |
| 5 | g4497.t2 | PRINTS | PR00862 | Prolyl oligopeptidase serine protease (S9A) signature | 25 | 40 | 0 |
| 4 | g4497.t2 | PRINTS | PR00862 | Prolyl oligopeptidase serine protease (S9A) signature | 48 | 70 | 0 |
| 1 | g4497.t2 | Pfam | PF00326 | Prolyl oligopeptidase family | 1 | 123 | 0 |
| 6 | g4497.t2 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 13 | 123 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
| GO:0008236 | serine-type peptidase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
