General information for g4497.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4497 is located on chr_2: 2911052..2912184 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4497 | g4497.t3 | isoform | g4497.t3 | 2911052 | 2911749 |
| chr_2 | g4497 | g4497.t3 | exon | g4497.t3.exon1 | 2911052 | 2911749 |
| chr_2 | g4497 | g4497.t3 | cds | g4497.t3.CDS1 | 2911053 | 2911256 |
| chr_2 | g4497 | g4497.t3 | TSS | g4497.t3 | 2912310 | 2912310 |
| chr_2 | g4497 | g4497.t3 | TTS | g4497.t3 | NA | NA |
Sequences
>g4497.t3 Gene=g4497 Length=698
TTTTTACTCGTACAATACTGGTCTACAAAATCAAAATGTAATTTATTATCAAGAATCGCT
TGATGGTGAGAGAAAAGTCTTTCTCGATCCAAATGAACTCTCATCAGATGGAACGGTTGC
TCTGCAAAGTCTGCATTTTACAAAGGATGGATCTTTGTTAGCATATGGATTGTCAGAAAG
TGGTAGTGATTGGGTAAAAATCAAGTTTAGGGATGTTGAGAAGAATGAAGATTTCCCTGA
AACACTTGAGCATAGCAAATTCTTTACACCTACTTGGACGCATGATAATAAAGGTGTATT
TTATGGAAAATTTCTACCTCAAGGAACTGCTGATGGTTGCGAAACTAATGCAAATGAGAA
TCAAAAAGTGTACTATCATAGAATAGGCACATCACAAGATTCTGATGTTCTCGTGGCTGA
ATTTCCTGAGGAACCGAATTGGCGTTTTTCAGCAGAAGTATCTGATTGTGGTCATTATTT
ATTATTTTATGTTATGTATGGTTGCAATGATCACCTTATTTATTTTGCTGATTTGCGAAA
AACACCTGAAATAACAGGAAAATTGGAATTTACAAAAGTTGTAACAGAATTCAAGAATGA
TTATGATTACATCACAAATAATGAAAGTATTTTCTATTTCCGTACTAATAAAGGAGCACC
AAATTATCATATAATTGCAATAGATTTTGAAAACTATG
>g4497.t3 Gene=g4497 Length=68
MYGCNDHLIYFADLRKTPEITGKLEFTKVVTEFKNDYDYITNNESIFYFRTNKGAPNYHI
IAIDFENY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g4497.t3 | Gene3D | G3DSA:2.130.10.120 | Prolyl oligopeptidase | 1 | 68 | 0.00e+00 |
| 1 | g4497.t3 | Pfam | PF02897 | Prolyl oligopeptidase, N-terminal beta-propeller domain | 3 | 67 | 0.00e+00 |
| 2 | g4497.t3 | SUPERFAMILY | SSF50993 | Peptidase/esterase ‘gauge’ domain | 9 | 67 | 8.63e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
