General information for g4502.t31
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4502 is located on chr_2: 2920023..2924003 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4502 | g4502.t31 | TTS | g4502.t31 | 2919771 | 2919771 |
| chr_2 | g4502 | g4502.t31 | isoform | g4502.t31 | 2920023 | 2923675 |
| chr_2 | g4502 | g4502.t31 | exon | g4502.t31.exon1 | 2920023 | 2920275 |
| chr_2 | g4502 | g4502.t31 | exon | g4502.t31.exon2 | 2920402 | 2920620 |
| chr_2 | g4502 | g4502.t31 | exon | g4502.t31.exon3 | 2920683 | 2920774 |
| chr_2 | g4502 | g4502.t31 | exon | g4502.t31.exon4 | 2920908 | 2921007 |
| chr_2 | g4502 | g4502.t31 | exon | g4502.t31.exon5 | 2922916 | 2922997 |
| chr_2 | g4502 | g4502.t31 | cds | g4502.t31.CDS1 | 2922991 | 2922997 |
| chr_2 | g4502 | g4502.t31 | exon | g4502.t31.exon6 | 2923128 | 2923308 |
| chr_2 | g4502 | g4502.t31 | cds | g4502.t31.CDS2 | 2923128 | 2923210 |
| chr_2 | g4502 | g4502.t31 | exon | g4502.t31.exon7 | 2923366 | 2923597 |
| chr_2 | g4502 | g4502.t31 | exon | g4502.t31.exon8 | 2923663 | 2923675 |
| chr_2 | g4502 | g4502.t31 | TSS | g4502.t31 | NA | NA |
Sequences
>g4502.t31 Gene=g4502 Length=1172
CGTGAGCGGTCACGAGAACGCGATTTTCCCTTATCAGAGGCGTTGCTTTCACTTCTATTT
CTGTCACGATTTGATCGCTTGCTGTCACTACGAGCTGAATCTCGACTGCGAGAACGTGAT
TTCTCAGAATATCGTGAATTTGAGCGACTCTTCTTCTTCTCTACAGGTGATTTCGAACGA
CTTCCACGAGACTTTGAACGGCTCTCATCTCTTGATCTACGCGAGCTGCGTCTTGAGCGG
GAACTGTGAACGACGACGTGATCGGCTTCTAGAGCGGCTTGATGATGATGATCTTGCACC
TCCACGACCTCTTCCATTACGACGAGTGTCTTCAACTAAACGAATGCGACGTCCATTGAG
TTCTGTATCATCCAACTTCTCAATAGCAGTTTTCATGTCTTTTGCTGATGCAAATTCAAC
AACTCTTATATGATACATTCGAATTATTTTTACAACTTACCAGCATAAGTGACTTCACCA
GCTTGACGCATATAATCCTTGAGATCCTGCCAACTAACGCGTGATGACAAATTCTCAACA
ATTAAACGATATTCTGTTCGCAATGGTGGCCCATATCGCGAGCTATTTCTGGAACTATTA
TGTCTACTCGACCTCCTCCGCCTCTTCTGCCATATCTGTCATCATATCTATCTCTATGAC
TCCCACGTGCTGTTCCACGAGCTGGCTCAACTACAACTCTCTCGCCAAGCAATTCTTTCC
CATTCAACTCATAAACAGCATCATCTGCATCTCGATAGTCTTCAAATTCAACGAAGCCAT
AACCATTTTTAATCAAAATATCTCTTGTTCTTCCATAACCTTTGAAAAACTTTTCCAAAT
CTCGCTCGCGTGTTCCATATGGCAAGCCTCCGACGTATACTCTTGATCCAACCATTGTTA
TACGACTTGTTTATTTGCTGTCTATTTAATGACTATATTAATGAATGCAACTATTTTTTA
AGAGCAATTTTCACTTTTCACTGCCTAATTACTGATTTTAAAATATTTCAACAACGATAT
AGCGTGCTGACCACTGCTCTTGAAATATCAATTTTCGAAAAAAAAGTTTCAAGCCCCACT
AAAACTTTTTCGAAGTTTGTCGAAAATAACAAAAACAAAAAAGGTAAAACTTTTTTAAAA
ACTCTTTTTAGGTGTTAATTAAATCCCAATTA
>g4502.t31 Gene=g4502 Length=29
MRRPLSSVSSNFSIAVFMSFADANSTTLI
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed