Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4502 g4502.t50 TTS g4502.t50 2919771 2919771
chr_2 g4502 g4502.t50 isoform g4502.t50 2920023 2923778
chr_2 g4502 g4502.t50 exon g4502.t50.exon1 2920023 2920277
chr_2 g4502 g4502.t50 exon g4502.t50.exon2 2920405 2920618
chr_2 g4502 g4502.t50 exon g4502.t50.exon3 2920683 2920770
chr_2 g4502 g4502.t50 exon g4502.t50.exon4 2920909 2921004
chr_2 g4502 g4502.t50 exon g4502.t50.exon5 2922916 2922986
chr_2 g4502 g4502.t50 cds g4502.t50.CDS1 2922956 2922986
chr_2 g4502 g4502.t50 exon g4502.t50.exon6 2923128 2923307
chr_2 g4502 g4502.t50 cds g4502.t50.CDS2 2923128 2923307
chr_2 g4502 g4502.t50 exon g4502.t50.exon7 2923366 2923597
chr_2 g4502 g4502.t50 cds g4502.t50.CDS3 2923366 2923597
chr_2 g4502 g4502.t50 exon g4502.t50.exon8 2923663 2923778
chr_2 g4502 g4502.t50 cds g4502.t50.CDS4 2923663 2923768
chr_2 g4502 g4502.t50 TSS g4502.t50 NA NA

Sequences

>g4502.t50 Gene=g4502 Length=1252
TTAATCTTCCATGCTCTCGTTGCGATCAGGAGAACGGTTGTTGTTTACTGATCCTGAACG
TGATCTCGATCTTGAACGAGACTTGTCATTTTTGTCCTCAGAGCGTGAGCGGTCACGAGA
ACGCGATTTTCCCTTATCAGAGGCGTTGCTTTCACTTCTATTTCTGTCACGATTTGATCG
CTTGCTGTCACTACGAGCTGAATCTCGACTGCGAGAACGTGATTTCTCAGAATATCGTGA
ATTTGAGCGACTCTTCTTCTTCTCTACAGGTGATTTCGAACGACTTCCACGAGACTTTGA
ACGGCTCTCATCTCTTGATCTACGCGAGCTGCGTCTTGAGCGGGAACTTGAACGACGACG
TGATCGGCTTCTAGAGCGGCTTGATGATGATGATCTTGCACCTCCACGACCTCTTCCATT
ACGACGAGTGTCTTCAACTAAACGAATGCGACGTCCATTGAGTTCTGTATCATCCAACTT
CTCAATAGCAGTTTTCATGTCTTTTGCTGATGCAAATTCAACAACTCTTTCGAATTATTT
TTACAACTTACCAGCATAAGTGACTTCACCAGCTTGACGCATATAATCCTTGAGATCCTA
ACTAACGCGTGATGACAAATTCTCAACAATTAAACGATATTCTGTTCGCAATGGTGGCCC
ATATCGCGAGCTATTTCTGGAACTATTATGTCTACCTCCTCCGCCTCTTCTGCCATATCT
GTCATCATATCTATCTCTATGACTCCCACGTGCTGTTCCACGAGCTGGCTCAACTACAAC
TCTCGCCAAGCAATTCTTTCCCATTCAACTCATAAACAGCATCATCTGCATCTCGATAGT
CTTCAAATTCAACGAAGCCATAACCATTTTTAATCAAAATATCTCTTGTTCTTCCATAAC
CTTTGAAAAACTTTTCCAAATCTCGCTCGCGTGTTCCATATGGCAAGCCTCCGACGTATA
CTCTTGATCCAACCATTGTTATACGACTTGTTTATTTCTGTCTATTTAATGACTATATTA
ATGAATGCAACTATTTTTTAAGAGCAATTTTCACTTTTCACTGCCTAATTACTGATTTTA
AAATATTTCAACAACGATATAGCGTGCTGACCACTGCTCTTGAAATATCAATTTTCGAAA
AAAAAGTTTCAAGCCCCACTAAAACTTTTTCGAAGTTTGTCGAAAATAACAAAAACAAAA
AAGGTAAAACTTTTTTAAAAACTCTTTTTAGGTGTTAATTAAATCCCAATTA

>g4502.t50 Gene=g4502 Length=182
MLSLRSGERLLFTDPERDLDLERDLSFLSSERERSRERDFPLSEALLSLLFLSRFDRLLS
LRAESRLRERDFSEYREFERLFFFSTGDFERLPRDFERLSSLDLRELRLERELERRRDRL
LERLDDDDLAPPRPLPLRRVSSTKRMRRPLSSVSSNFSIAVFMSFADANSTTLSNYFYNL
PA

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed