General information for g4502.t53
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4502 is located on chr_2: 2920023..2924003 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4502 | g4502.t53 | TTS | g4502.t53 | 2919771 | 2919771 |
| chr_2 | g4502 | g4502.t53 | isoform | g4502.t53 | 2920023 | 2923778 |
| chr_2 | g4502 | g4502.t53 | exon | g4502.t53.exon1 | 2920023 | 2920275 |
| chr_2 | g4502 | g4502.t53 | exon | g4502.t53.exon2 | 2920402 | 2920618 |
| chr_2 | g4502 | g4502.t53 | exon | g4502.t53.exon3 | 2920683 | 2920774 |
| chr_2 | g4502 | g4502.t53 | exon | g4502.t53.exon4 | 2920915 | 2921005 |
| chr_2 | g4502 | g4502.t53 | exon | g4502.t53.exon5 | 2922916 | 2922997 |
| chr_2 | g4502 | g4502.t53 | cds | g4502.t53.CDS1 | 2922991 | 2922997 |
| chr_2 | g4502 | g4502.t53 | exon | g4502.t53.exon6 | 2923128 | 2923307 |
| chr_2 | g4502 | g4502.t53 | cds | g4502.t53.CDS2 | 2923128 | 2923210 |
| chr_2 | g4502 | g4502.t53 | exon | g4502.t53.exon7 | 2923366 | 2923597 |
| chr_2 | g4502 | g4502.t53 | exon | g4502.t53.exon8 | 2923665 | 2923778 |
| chr_2 | g4502 | g4502.t53 | TSS | g4502.t53 | NA | NA |
Sequences
>g4502.t53 Gene=g4502 Length=1261
TTAATCTTCCATGCTCTCGTTGCGATCAGGAGAACGGTTGTTGTTTACTGATCCTGAACG
TGATCTCGATCTTGAACGAGACTTGTCATTTTTGTCCTCAGAGCGTGAGCGGTCGAGAAC
GCGATTTTCCCTTATCAGAGGCGTTGCTTTCACTTCTATTTCTGTCACGATTTGATCGCT
TGCTGTCACTACGAGCTGAATCTCGACTGCGAGAACGTGATTTCTCAGAATATCGTGAAT
TTGAGCGACTCTTCTTCTTCTCTACAGGTGATTTCGAACGACTTCCACGAGACTTTGAAC
GGCTCTCATCTCTTGATCTACGCGAGCTGCGTCTTGAGCGGGAACTTGAACGACGACGTG
ATCGGCTTCTAGAGCGGCTTGATGATGATGATCTTGCACCTCCACGACCTCTTCCATTAC
GACGAGTGTCTTCAACTAAACGAATGCGACGTCCATTGAGTTCTGTATCATCCAACTTCT
CAATAGCAGTTTTCATGTCTTTTGCTGATGCAAATTCAACAACTCTTATATGATACATTC
GAATTATTTTTACAACTTACCAGCATAAGTGACTTCACCAGCTTGACGCATATAATCCTT
GAGATCCTCAACTAACGCGTGATGACAAATTCTCAACAATTAAACGATATTCTGTTCGCA
ATGGTGGCCCATATCGCGAGCTATTTCTGGAACTATTATCGACCTCCTCCGCCTCTTCTG
CCATATCTGTCATCATATCTATCTCTATGACTCCCACGTGCTGTTCCACGAGCTGGCTCA
ACTACAACTCTCGCCAAGCAATTCTTTCCCATTCAACTCATAAACAGCATCATCTGCATC
TCGATAGTCTTCAAATTCAACGAAGCCATAACCATTTTTAATCAAAATATCTCTTGTTCT
TCCATAACCTTTGAAAAACTTTTCCAAATCTCGCTCGCGTGTTCCATATGGCAAGCCTCC
GACGTATACTCTTGATCCAACCATTGTTATACGACTTGTTTATTTGCTGTCTATTTAATG
ACTATATTAATGAATGCAACTATTTTTTAAGAGCAATTTTCACTTTTCACTGCCTAATTA
CTGATTTTAAAATATTTCAACAACGATATAGCGTGCTGACCACTGCTCTTGAAATATCAA
TTTTCGAAAAAAAAGTTTCAAGCCCCACTAAAACTTTTTCGAAGTTTGTCGAAAATAACA
AAAACAAAAAAGGTAAAACTTTTTTAAAAACTCTTTTTAGGTGTTAATTAAATCCCAATT
A
>g4502.t53 Gene=g4502 Length=29
MRRPLSSVSSNFSIAVFMSFADANSTTLI
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed