General information for g4512.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ATP-citrate synthase.
Parent gene
- The parent gene g4512 is located on chr_2: 2954643..2956816 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4512 | g4512.t17 | isoform | g4512.t17 | 2952876 | 2956077 |
| chr_2 | g4512 | g4512.t17 | exon | g4512.t17.exon1 | 2952876 | 2952891 |
| chr_2 | g4512 | g4512.t17 | cds | g4512.t17.CDS1 | 2952876 | 2952891 |
| chr_2 | g4512 | g4512.t17 | exon | g4512.t17.exon2 | 2952957 | 2953333 |
| chr_2 | g4512 | g4512.t17 | cds | g4512.t17.CDS2 | 2952957 | 2953333 |
| chr_2 | g4512 | g4512.t17 | exon | g4512.t17.exon3 | 2954659 | 2954848 |
| chr_2 | g4512 | g4512.t17 | cds | g4512.t17.CDS3 | 2954659 | 2954820 |
| chr_2 | g4512 | g4512.t17 | exon | g4512.t17.exon4 | 2956047 | 2956077 |
| chr_2 | g4512 | g4512.t17 | TSS | g4512.t17 | 2956106 | 2956106 |
| chr_2 | g4512 | g4512.t17 | TTS | g4512.t17 | NA | NA |
Sequences
>g4512.t17 Gene=g4512 Length=614
ACGTTGTTTAAACAGTTTGACTAAAGTCAACTAATATTGGTGTGTGATTAAGTGAAATCA
TGTCAGCTAAAGCGATTCGTGAGGTAACAGGAAAGGAACTTATAAACAAATATTTGGGTG
GTGTGAACGAAACTGGTGTTCAAAAAAGTCGTTTTGCTGCTGTCACCGAGAATACAGATT
GGAGTCAATTGGTTGCTGAGAATCCATGGCTTGAAAGCACACCTCTCGTTGTTAAGCCAG
ATCAACTTATTAAGCGTCGTGGGAAATTAGGATTGATTGCAGTCAATAAGAATTTTTCTC
AAGTCAAGCAATGGATAAACGAGCGAATGGGAAAAGATCAAAAAGTTGGAAGTGCAGTTG
GCAAACTCCGAAATTTCATTATTGAGCCATTTATACCTCACAAGGATGATGAGGAAGCAT
ACGTTTGCATTTATTCACATCGAACGGCAGATACAATCTTATTTTATCATCAAGGTGGTG
TTGACATTGGTGACGTCGATTCAAAGGCTCTTAAGCTCGATGTTCCTGTTGGAGCAACAG
TCACAGTCGATGATATTCAAAAAACCTTGTTAAAAGAAGTTGCAACAGCCAAAAAAGCAC
GTATTGGCAAATTT
>g4512.t17 Gene=g4512 Length=185
MSAKAIREVTGKELINKYLGGVNETGVQKSRFAAVTENTDWSQLVAENPWLESTPLVVKP
DQLIKRRGKLGLIAVNKNFSQVKQWINERMGKDQKVGSAVGKLRNFIIEPFIPHKDDEEA
YVCIYSHRTADTILFYHQGGVDIGDVDSKALKLDVPVGATVTVDDIQKTLLKEVATAKKA
RIGKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g4512.t17 | Gene3D | G3DSA:3.30.470.110 | - | 1 | 185 | 0 |
| 1 | g4512.t17 | PANTHER | PTHR23118:SF0 | ATP-CITRATE SYNTHASE | 1 | 185 | 0 |
| 2 | g4512.t17 | PANTHER | PTHR23118 | ATP-CITRATE SYNTHASE | 1 | 185 | 0 |
| 3 | g4512.t17 | SUPERFAMILY | SSF56059 | Glutathione synthetase ATP-binding domain-like | 5 | 155 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
