General information for g4524.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Exportin-1.
Parent gene
- The parent gene g4524 is located on chr_2: 3057008..3058070 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4524 | g4524.t5 | TTS | g4524.t5 | 3056221 | 3056221 |
| chr_2 | g4524 | g4524.t5 | isoform | g4524.t5 | 3057008 | 3058070 |
| chr_2 | g4524 | g4524.t5 | exon | g4524.t5.exon1 | 3057008 | 3058070 |
| chr_2 | g4524 | g4524.t5 | cds | g4524.t5.CDS1 | 3057008 | 3057814 |
| chr_2 | g4524 | g4524.t5 | TSS | g4524.t5 | 3058761 | 3058761 |
Sequences
>g4524.t5 Gene=g4524 Length=1063
TGATGATTTTATATTATTTCATAGTGATTTTGTTTGTAAATATTAAAATGCTTATTCTCT
CTTCTTTCTCTCTTTTTAGAACATTTAAAGTTATTATTTCTTTTTTATGAATGGTTGATT
GGAAGTAGCAGCAGCAGAAAGAATCGTAAAAGAGAGAGTGCAAAGGAAGAATATTTTTCT
CATAATAATCCTGTGTGAATCCGTATAGTGTGAAATTTTTTTTAATCAAAAGAAAGAAGC
TGCTAATTACGAAAGAATGGCGACGTTACGAATGGAAGAAGCATCTCGATTACTCGATTT
TTCGCAAAAGCTGGATATTTCTTTATTAGAGAATATTGTCGGATGCTTATACAATAGTCA
GGGTGAACAATTAAGATTAGCTCAAGAAATTCTGACTACACTGAAAGAACATCCCGATGC
ATGGACGCGTGTTGATACAATTTTAGAGTTCAGTGAAAATCAACAAACAAAATATTATGC
CCTTCAAATTCTTGAAGAAGTAATCAAAACACGCTGGAAAGTTTTACCAAGAAATCAATG
TGAAGGCATAAAGAAATACGTAGTCGGACTTATTATAAAAACATCGTCTGATCCAAAAGT
TATGGAAACAAATAAAGTCTATCTTAATAAGTTGAACATTATTTTAGTTCAGATTCTAAA
ACGTGAATGGCCCAAAAATTGGGAGACCTTCATAAGCGATATAGTTGGTGCATCAAAGAC
AAATGAAACACTTTGTCAAAACAACATGATCATTTTAAAATTACTGAGTGAAGAGGTGTT
TGATTTCTCGAGTGGACAAATTACACAAACTAAAGCAAAGCATCTAAAAGATACGATGTG
CTCTGAATTTTCTCAAGTTTTTCAACTCTGTTCGTTTGTTTTGGAAAATTCATTGAATGC
ACCACTCATCAGCGCTACTCTTGAAACTTTGTTAAAATTTCTCAATTGGATTCCGCTTGG
TTATATTTTTGAGACTAAACTCATCAATATGCTTGTTGAAAAGTTCTTGGTTATCCCAAT
GTTTCGTAATGTAACGCTAAAATGTTTGTCTGAAATTGCTGGC
>g4524.t5 Gene=g4524 Length=269
MATLRMEEASRLLDFSQKLDISLLENIVGCLYNSQGEQLRLAQEILTTLKEHPDAWTRVD
TILEFSENQQTKYYALQILEEVIKTRWKVLPRNQCEGIKKYVVGLIIKTSSDPKVMETNK
VYLNKLNIILVQILKREWPKNWETFISDIVGASKTNETLCQNNMIILKLLSEEVFDFSSG
QITQTKAKHLKDTMCSEFSQVFQLCSFVLENSLNAPLISATLETLLKFLNWIPLGYIFET
KLINMLVEKFLVIPMFRNVTLKCLSEIAG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g4524.t5 | Gene3D | G3DSA:1.25.10.10 | - | 1 | 269 | 0.000 |
| 3 | g4524.t5 | PANTHER | PTHR11223:SF4 | EXPORTIN 1 (CRM1 HOMOLOG, YEAST) B | 8 | 269 | 0.000 |
| 4 | g4524.t5 | PANTHER | PTHR11223 | EXPORTIN 1/5 | 8 | 269 | 0.000 |
| 1 | g4524.t5 | Pfam | PF03810 | Importin-beta N-terminal domain | 42 | 107 | 0.000 |
| 2 | g4524.t5 | Pfam | PF08389 | Exportin 1-like protein | 120 | 264 | 0.000 |
| 8 | g4524.t5 | ProSiteProfiles | PS50166 | Importin-beta N-terminal domain profile. | 42 | 108 | 14.122 |
| 6 | g4524.t5 | SMART | SM00913 | IBN_N_2 | 42 | 108 | 0.000 |
| 5 | g4524.t5 | SUPERFAMILY | SSF48371 | ARM repeat | 24 | 268 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0031267 | small GTPase binding | MF |
| GO:0006886 | intracellular protein transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
