General information for g4530.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Profilin.
Parent gene
- The parent gene g4530 is located on chr_2: 3104653..3105043 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4530 | g4530.t10 | isoform | g4530.t10 | 3099480 | 3104763 |
| chr_2 | g4530 | g4530.t10 | exon | g4530.t10.exon1 | 3099480 | 3101123 |
| chr_2 | g4530 | g4530.t10 | TTS | g4530.t10 | 3099488 | 3099488 |
| chr_2 | g4530 | g4530.t10 | cds | g4530.t10.CDS1 | 3101102 | 3101123 |
| chr_2 | g4530 | g4530.t10 | exon | g4530.t10.exon2 | 3101201 | 3101376 |
| chr_2 | g4530 | g4530.t10 | cds | g4530.t10.CDS2 | 3101201 | 3101376 |
| chr_2 | g4530 | g4530.t10 | exon | g4530.t10.exon3 | 3104653 | 3104763 |
| chr_2 | g4530 | g4530.t10 | cds | g4530.t10.CDS3 | 3104653 | 3104763 |
| chr_2 | g4530 | g4530.t10 | TSS | g4530.t10 | 3105043 | 3105043 |
Sequences
>g4530.t10 Gene=g4530 Length=1931
ATGAGTTGGCAAGATTATGTAGATAACCAATTAATAGCATCACAGTGCGTATCAAAGGCC
TGCATTTCTGGCCACGACGGAGGTATTTGGGCGAAATCAGAAGGTTTTGAGGTAACAAAG
GAAGAACTCGCCAAATTAGTACAAGGCTTTGATAAAACTGAAATTTTAACGTCAGGCGGA
GTAACACTCGCCGGACAACGTCACATTTACCTCTCTGGAACAGATCGTGTTATTCGTGCG
AAGTTGGGTAAAGTTGGTGTTCACTGTATGAAAACACAACAAGGTAACTGTAATTGTTGC
AATTTATGAAGAGCCAGTTCAGCCACAACAGGCTGCTTCCGTCGTTGAGAAACTTGGAGA
CTATTTGATCACATGTGGTTATTAGAGGTAAGGCATCATCGCGCAAATTAGAACACACAC
GCATTTGTCCGCCCAGCCAAGTCAGCACCCCCAAAATTCAATAAAAACAAAATACTATAA
ACACAACATCAACAAAACATTTGCAGAAAAGAAGAAAAAACTATCAATAATAATCGCAAT
TTTGCATACATTTAAAATGAATTTTTTTTGTTTCATCGTGTGATTGATTGAAGATTTGAC
ATTCTTCCAAGCACACATCAAAAAACATCCTTAAATAAAAAATATACATATTCATCTTAT
CCCCACAATTTACATTTATATAAATACATGTATAAAAGAATATTTAAAGCTCATTTTATC
TGAATGGAATTTTTTAAATCATTCTCTTTTCATTTTGAGTTTTTCGTATGAGATTTTTGA
ATTTTTTTCTATGTATAACCAAATTCTCGTGAATAAATTGAAATTCGATTCATTTTTGTG
ATCGCTTAGAAAGAAAACAACTGACAAAATTTTGAGTAAAAAGTTTTTTTTATACAAGAC
TTGCTTTTAGTTTTATGAATCCCTTTTATATCTTCTCTTTATTTTATGTGAGCTAGATAA
ATAATATACATATATTCCTTTGACAAATTACCTAAGATTTCTTTTCATAAATAATATTCG
TGTACTGTAAAAGTAATTTATGAGCAACAAGCAATTTTTTGAAATGTGCGTTTTCTCTCA
CAGTCAGTTCAAATGAATTCGCATTATGATTTGCGAATGCTCTTTGCTTCCCTCTCTCTC
TATGCATATACAGCATTAAAAAAGTAGAAAATTTTCAATTTTGGAAAGTTTAACAGAGAT
GATGGTTTGACAATGTCAACGCACTTTATTTTAGAAAGAATGCTGTTTAAATTAAATTTT
TTTTTTGTAAAAGCTTGAACCGCTTATATAAATTGACAATTCTTTCATTTTTTATATTTT
ATGTTATCAATAGTAGTATTCAGCTTCTTTGCTCTTTCTTTCATTTTTGTATACGAAAAA
ATGCATCAACAGTAAAAACCGGCCACCAATCGAATATTCGTTGGATGTCTTATGATATTT
ATTGTTTATTACATTTTTTCTTTTTCATACCTCTCTCGTCTATCGAGATTTTCAAGCAAG
GATTTTCTTTACTTCTTGCGCTCATTCTTAATCTATAAAATTAAGTTGATTAGGAACACA
CTCGTTTTATTGATTGTTTTTTATTATTTTACAATTTTGTAATACGCTGCAAAAGAAGTA
AAAAAGTCAATGTGGACTTATAGCGTGCATATTTCGGCTCGAATAGTTAATAACTGATGA
ATTTGAATATTTTAAAGACGATTGTCATTAAATTGATTTTTTCAGTTTACTATTTAAGAA
TTTTCACGCTATTTTTTCATCTTGAATAACTTGAAAAAAAGTAATGATGATGATGATGTA
ATTATTAATAATTATAATAATTTTTTGAAAAAAAACTGATGAACAATCGGAAAATAGGAA
TGCATAAGAAGAAAGTATGTGAGAAATAAAAAGTGGTTTTCTAATTAAATAAATAAACAG
AAAAAATAGCT
>g4530.t10 Gene=g4530 Length=102
MSWQDYVDNQLIASQCVSKACISGHDGGIWAKSEGFEVTKEELAKLVQGFDKTEILTSGG
VTLAGQRHIYLSGTDRVIRAKLGKVGVHCMKTQQGNCNCCNL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g4530.t10 | CDD | cd00148 | PROF | 2 | 94 | 8.10026E-31 |
| 12 | g4530.t10 | Gene3D | G3DSA:3.30.450.30 | Dynein light chain 2a | 1 | 97 | 3.5E-26 |
| 2 | g4530.t10 | PANTHER | PTHR11604 | PROFILIN | 1 | 95 | 7.9E-25 |
| 3 | g4530.t10 | PANTHER | PTHR11604:SF0 | PROFILIN | 1 | 95 | 7.9E-25 |
| 6 | g4530.t10 | PRINTS | PR01640 | Plant profilin signature | 1 | 12 | 2.5E-8 |
| 10 | g4530.t10 | PRINTS | PR00392 | Profilin signature | 3 | 12 | 1.7E-9 |
| 8 | g4530.t10 | PRINTS | PR00392 | Profilin signature | 18 | 27 | 1.7E-9 |
| 4 | g4530.t10 | PRINTS | PR01640 | Plant profilin signature | 24 | 37 | 2.5E-8 |
| 7 | g4530.t10 | PRINTS | PR00392 | Profilin signature | 36 | 56 | 1.7E-9 |
| 9 | g4530.t10 | PRINTS | PR00392 | Profilin signature | 60 | 74 | 1.7E-9 |
| 5 | g4530.t10 | PRINTS | PR01640 | Plant profilin signature | 79 | 94 | 2.5E-8 |
| 1 | g4530.t10 | Pfam | PF00235 | Profilin | 1 | 94 | 2.1E-27 |
| 14 | g4530.t10 | ProSitePatterns | PS00414 | Profilin signature. | 1 | 8 | - |
| 15 | g4530.t10 | SMART | SM00392 | prof_2 | 1 | 99 | 3.3E-22 |
| 11 | g4530.t10 | SUPERFAMILY | SSF55770 | Profilin (actin-binding protein) | 2 | 94 | 1.96E-27 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003779 | actin binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
